PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G143400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 349aa    MW: 39445.3 Da    PI: 5.4805
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G143400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.48.8e-1371263128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                           Gf F+Pt+e+lv++yL++k++g++l+    i+++di+  + w++   +k+ +   ++++ ++ k  ++ +  r +     ++t   ++ 
  Manes.01G143400.1.p   7 CGFCFKPTNENLVHFYLQRKLDGQPLPP-GLITDCDIHAQNSWKILGDIKNFD--GFYYVFTNLKRMSKAKIDRRAG----QTT---NRF 86 
                          69***********************999.89**************86665543..3444444444444455555333....222...233 PP

                  NAM  93 lskkgelvglkktLvfy...kg.rapkgektdWvmheyrl 128
                           + +g++ + kk ++f    k+ ++   ++ +W+m e++l
  Manes.01G143400.1.p  87 QQYEGKTHWAKKAFIFEvdkKNlKSVGQNNGRWLMVEFSL 126
                          33368899999999999654232444445889*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-194143IPR003441NAC domain
PROSITE profilePS5100517.135143IPR003441NAC domain
PfamPF023652.3E-88126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGFQWLCGFC FKPTNENLVH FYLQRKLDGQ PLPPGLITDC DIHAQNSWKI LGDIKNFDGF  60
YYVFTNLKRM SKAKIDRRAG QTTNRFQQYE GKTHWAKKAF IFEVDKKNLK SVGQNNGRWL  120
MVEFSLGNEG FDGKAVLCRI YNKHARDFHK KEQVGVDYSN CEAIVPYVEK KQVSLADDKE  180
GNQHPTKKMK KQKSTADDEE GHQNSKKMKQ QEPVDLYGES IGSTSCCPSN FVVEQLPLSS  240
DYSSRFPEDE AVFLADGELN SLLDFPSDYD LTSLLLDMDV GRGTSPEDEL SKFLAENIDD  300
GGFFSSMPPL IMQCNKVNKD DENGNNLSSS MPLQGGFCDR NAVLRDVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G143400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051820.0KR605182.1 Manihot esculenta NAC transcription factors 44 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609638.10.0NAC domain-containing protein 41-like
TrEMBLA0A2C9WN370.0A0A2C9WN37_MANES; Uncharacterized protein
STRINGcassava4.1_021626m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1653238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.27e-10NAC domain containing protein 52
Publications ? help Back to Top
  1. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]