PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G141900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 26008.6 Da    PI: 9.0687
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G141900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF946.8e-30959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+tgk++e++s
  Manes.01G141900.1.p  9 KRIENSTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEFIS 59
                         79***********************************************86 PP
2K-box85.21.4e-2871169199
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                          yqk+ g +l+++++e++q++l kL++ +++L+r +R+++GedL++ s+ eL+ Le+++ ++l+ +R++K++++++q+e+ +kk ++l+e+
  Manes.01G141900.1.p  71 YQKALGIDLWSTHYERMQEHLGKLREINNKLRRDIRQRMGEDLNDVSILELRDLEERMASALEFVRDRKYHVIKTQTETCRKKVRNLEER 160
                          78899999********************************************************************************** PP

                K-box  91 nkaLrkkle 99 
                          + +L  ++e
  Manes.01G141900.1.p 161 HGDLLLEFE 169
                          *99987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.8161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-37294IPR002100Transcription factor, MADS-box
CDDcd002652.33E-39280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-1982167IPR002487Transcription factor, K-box
PROSITE profilePS5129714.59184174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSN TGKFHEFISP  60
TITTKKMFDQ YQKALGIDLW STHYERMQEH LGKLREINNK LRRDIRQRMG EDLNDVSILE  120
LRDLEERMAS ALEFVRDRKY HVIKTQTETC RKKVRNLEER HGDLLLEFEA KCEDLQYGLV  180
ENEGDYESAI TIANGASNLY AFRLQHGHPT ANGGGFGSHE LRLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-14159159MEF2C
5f28_B1e-14159159MEF2C
5f28_C1e-14159159MEF2C
5f28_D1e-14159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G141900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633782.11e-167floral homeotic protein DEFICIENS-like
SwissprotQ003J21e-132TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A2C9WM071e-165A0A2C9WM07_MANES; Uncharacterized protein
STRINGcassava4.1_021663m1e-151(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]