PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G141500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family SRS
Protein Properties Length: 341aa    MW: 36337.1 Da    PI: 7.6266
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G141500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702229.36.7e-711082573154
               DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 
                           g++sCqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpa+krrerqqq aa+++++++++ +   +++++l+++ +s+l++t+l+
  Manes.01G141500.1.p 108 GGNISCQDCGNQAKKDCVHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQFAALQQQQQQQQLQRCGENPKRLRENPSSSLACTRLP 197
                          5789***********************************************************999999999999999***********9 PP

               DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                          ++ s   le+ ++P+evss+avfrcvrvs++d++++++aYqtav+igGh+fkGiLyd+G+e+
  Manes.01G141500.1.p 198 TNAS--GLEVGNFPAEVSSPAVFRCVRVSAIDENDDQCAYQTAVNIGGHLFKGILYDHGPES 257
                          9865..589999************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.9E-67110256IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.2E-28112154IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.9E-27208255IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAGLFSLGGG GGGGGGGRGS NQEDQHNNPP TEIPQESWFW YKNEDIPYKG FELWQQQESL  60
RQRHQNTQQD LYSSAAGLGV GPSRSSINVS DESSSRSAFM MMRSSSGGGN ISCQDCGNQA  120
KKDCVHMRCR TCCKSRGFDC QTHVKSTWVP ASKRRERQQQ FAALQQQQQQ QQLQRCGENP  180
KRLRENPSSS LACTRLPTNA SGLEVGNFPA EVSSPAVFRC VRVSAIDEND DQCAYQTAVN  240
IGGHLFKGIL YDHGPESTYM PATETSSGGA SGEVQPLNLI RAGSTTASTA ISPTGAGGGV  300
MSASTSAAAA AAAFMDPSSL YPIPLNSFIA GTPFFQNPRS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G141500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619302.10.0protein SHI RELATED SEQUENCE 1-like
SwissprotQ9SD401e-104SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A2C9WN110.0A0A2C9WN11_MANES; Uncharacterized protein
STRINGcassava4.1_032269m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-90Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]