PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G113300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NF-YC | ||||||||
Protein Properties | Length: 202aa MW: 23360.8 Da PI: 6.0186 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 126.8 | 7.8e-40 | 57 | 159 | 2 | 100 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 l +fw++q i++ + fk +h+lPlarik+++k++ +vkmisa++P+llskacelfileltlrswl+++e+kr+ l++ dia a+ d Manes.01G113300.1.p 57 LDNFWNRQlwkIQNISAFKsRHQLPLARIKRVMKTNREVKMISADTPILLSKACELFILELTLRSWLQTQECKRQMLQRFDIARAIRLVD 146 789*****88888899999889******************************************************************** PP NF-YC 88 ifdflvdivprde 100 + dflv+ v d+ Manes.01G113300.1.p 147 TLDFLVELVSFDH 159 *******999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.59E-23 | 60 | 161 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.3E-28 | 75 | 143 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.5E-14 | 79 | 142 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MDLNQSIEFN LSSTSSPQLH NFMPMSSFLL PNYNHTTKQG CEEARNSRFM QVLKQNLDNF 60 WNRQLWKIQN ISAFKSRHQL PLARIKRVMK TNREVKMISA DTPILLSKAC ELFILELTLR 120 SWLQTQECKR QMLQRFDIAR AIRLVDTLDF LVELVSFDHH NKDDETGNCG EDVEPLSAVQ 180 VPVPMIDINE DLVLTDQEIA P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-28 | 64 | 155 | 3 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G113300.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629508.1 | 1e-148 | nuclear transcription factor Y subunit C-4-like isoform X1 | ||||
Refseq | XP_021629516.1 | 1e-148 | nuclear transcription factor Y subunit C-4-like isoform X1 | ||||
Swissprot | Q9SMP0 | 6e-33 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A2C9WJP3 | 1e-147 | A0A2C9WJP3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026359m | 1e-148 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14399 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 2e-35 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G113300.1.p |
Publications ? help Back to Top | |||
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