PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G113200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 317aa    MW: 35207.6 Da    PI: 8.0974
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G113200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.51.3e-14242266226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ktelC+ +++tGtC+yGd C+FaHg
  Manes.01G113200.1.p 242 KTELCNKWQETGTCSYGDHCQFAHG 266
                          9***********************8 PP
2zf-CCCH17.76.6e-06279304126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          ykt  Cr  +++  C+yG rC+F H+
  Manes.01G113200.1.p 279 YKTQVCRMVLAGEVCPYGHRCHFRHS 304
                          99*********66**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.6E-17236273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-10237272IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-9240267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.957240268IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-11242266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-9274309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-12274307IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535278306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEKSVSTPSD PKTVSPPSKS PPLASPPPSE LLHTQLFASS FTTLYHSIFP PKPSPLPSSF  60
SFSLTPSTSS PSSSATIDDF DTEHRLHQAR LILEYQELSD HYELSLSRLQ ALTEEIESLR  120
RENDDLRLTN NELVELLSFS SQAAIRSRFS SSEMVEPSPL DRSTGRVSLP KSISVRSSGY  180
LKMNRAGASN GGQSSTSTRA QVPSHLHQIV SGSVQQRVCV PRGVKREDAA VELDVYNQGM  240
RKTELCNKWQ ETGTCSYGDH CQFAHGITEL RPVIRHPRYK TQVCRMVLAG EVCPYGHRCH  300
FRHSLTEQER VIMGPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A8e-21242307570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G113200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623848.10.0zinc finger CCCH domain-containing protein 14-like isoform X2
SwissprotQ9C9N35e-85C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2C9WM330.0A0A2C9WM33_MANES; Uncharacterized protein
STRINGcassava4.1_030852m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-85C3H family protein