PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G110000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 298aa    MW: 32067.3 Da    PI: 8.2612
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G110000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.18.9e-314105197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++
  Manes.01G110000.1.p   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          ql+q ++e +l 
  Manes.01G110000.1.p  94 QLCQDAVEGVLK 105
                          ****99887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.8E-941293IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.7473109IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-244101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQDAV EGVLKGTSIT PINSEAAANG  120
HGPPLKVYDI RHVSKDENSA ASNDAKRVKT RCRVRRVVKP KVSNNNKPCR GVGLGAAGNE  180
LTRSMSHGSS VSHLSELAMV DGESKETESM VSEETAEASL LFKAEPESAA KSNGGVQDHA  240
TREMAGLGLE LTLGLEPVSR ASHVVPVKKR KLESYGYSSS EDDTYNTELG LDYPACH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G110000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021621212.10.0LOB domain-containing protein 41-like
SwissprotQ9M8861e-109LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2C9WJS00.0A0A2C9WJS0_MANES; Uncharacterized protein
STRINGcassava4.1_012877m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-97LOB domain-containing protein 41