PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G106200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 385aa    MW: 41906.3 Da    PI: 6.0483
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G106200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.4e-062363438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         r+C+++     + +C+ ++++lC+ C    H        H+
  Manes.01G106200.1.p 23 RVCDTCRAAACTVYCRADSVYLCAGCDARVHAAnrvasqHE 63
                         79******99*****************99995555666666 PP
2zf-B_box29.51.5e-0965110342
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                           ++C+ +e+ ++ + C+ +   lC  C   +H+       H++vp+
  Manes.01G106200.1.p  65 VWVCEACERAPAAFLCKADAASLCTACDADIHSAnplarrHQRVPI 110
                          689*****************************66899999**9997 PP
3CCT68.81.4e-23315358144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR++GrF+k++
  Manes.01G106200.1.p 315 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIRGRFAKRT 358
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.9E-72067IPR000315B-box-type zinc finger
PROSITE profilePS5011910.1962067IPR000315B-box-type zinc finger
CDDcd000215.91E-62367No hitNo description
PROSITE profilePS5011911.30563110IPR000315B-box-type zinc finger
PfamPF006431.4E-764110IPR000315B-box-type zinc finger
CDDcd000211.08E-866110No hitNo description
SMARTSM003361.8E-1068110IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648315357IPR010402CCT domain
PfamPF062032.8E-17315357IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MLKNENASDG GGGGGGTSNN WARVCDTCRA AACTVYCRAD SVYLCAGCDA RVHAANRVAS  60
QHERVWVCEA CERAPAAFLC KADAASLCTA CDADIHSANP LARRHQRVPI LPISGSLYGP  120
QAGNPAGETT EDMFMTQEGE EGVGEEEEDE AASWLLPNPV KSSNGQNYNG FLFGGGDVDE  180
YLDLMEYNSN SCGDQNQYSD QNNLQHYSVP HQKSCYGGDS VVPNHCAEAA RKDQLHHQYH  240
NFHLGLEIDS SSKAAYSYNG SISQSVSISS MDVGVVPDST MSEASISHHR PPKGTIDLFS  300
SPPMQMPSQF SPGDREARVL RYREKKKTRK FEKTIRYASR KAYAETRPRI RGRFAKRTDV  360
EVEVGQLFST TLMAEAGYGV VPSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G106200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634223.10.0zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-136COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2C9WJH50.0A0A2C9WJH5_MANES; Uncharacterized protein
STRINGcassava4.1_009557m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-113CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]