PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G103200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27881.6 Da PI: 6.9555 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.3 | 5.7e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ Manes.01G103200.1.p 9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 97.6 | 1.9e-32 | 75 | 171 | 3 | 99 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 ++++++++++++ +++ e +kL ++ie Lqr++R++ GedL+ +sl+eLq+Leqq++++lk++R++Kn+l+ e+i+elqkkek+l+e+n+ Manes.01G103200.1.p 75 SAEQVNNQSEQQGNWSLECSKLMARIEVLQRSLRNFAGEDLDGMSLRELQHLEQQIDTGLKRVRTRKNQLYNESISELQKKEKALHEQNN 164 566677889999****************************************************************************** PP K-box 93 aLrkkle 99 +L+k+le Manes.01G103200.1.p 165 MLSKQLE 171 ****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.099 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.78E-41 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-33 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-27 | 81 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.736 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD 60 SSMESILEKY ERYSSAEQVN NQSEQQGNWS LECSKLMARI EVLQRSLRNF AGEDLDGMSL 120 RELQHLEQQI DTGLKRVRTR KNQLYNESIS ELQKKEKALH EQNNMLSKQL EQNEKTMAEG 180 SNWEQQNLGQ NPTSFMPLPP PAIGGTLQTR EFMKENEEGM AQIEEPNTMQ MPSWMLRHVN 240 E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 8e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 8e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 8e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G103200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY515153 | 1e-54 | AY515153.1 Populus deltoides APETALA-like protein AP1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021623792.1 | 1e-179 | truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q6E6S7 | 1e-102 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A2C9WKY6 | 1e-177 | A0A2C9WKY6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_024345m | 1e-134 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 4e-85 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G103200.1.p |
Publications ? help Back to Top | |||
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