PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G094200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | TCP | ||||||||
Protein Properties | Length: 351aa MW: 38533.9 Da PI: 8.5103 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102.8 | 5.9e-32 | 50 | 189 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasns 85 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ ++ ++s++ as+s Manes.01G094200.1.p 50 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPVNFGlnhppiLTSSHEFGASQS 139 689*************************************************************66666433333333333333333333 PP TCP 86 ssg........................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 +++ + ++k+++ ar++t+ek + + Manes.01G094200.1.p 140 NKEgfktngtinwedpgglarpnfwssD----------------------SMLKNKSKEVARDSTHEKENWS 189 3333223333333333333333332221......................1222444444555555554443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.469 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.7E-29 | 52 | 185 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MMITSSSKEV DSPTKKEGDT SDGKISNGSS SSTSWLRLKD PRIVRVSRAF GGKDRHSKVC 60 TIRGLRDRRV RLSVPTAIQL YDLQDRLGLN QPSKVVDWLL NAAKHEIDEL PPLPMPPVNF 120 GLNHPPILTS SHEFGASQSN KEGFKTNGTI NWEDPGGLAR PNFWSSDSML KNKSKEVARD 180 STHEKENWSK GNDQEDNKLH SSLPGLINNN GIPYGSLFQL EHTNFPLSHL GSHGFAAQTA 240 DLHNVNAVSS PSTLSLSPGS QIFVCPSGTA QPYFPSHITA ASTEVDPRQI NHLQILTSST 300 QNFFPNTLAP TPYTMTQSAR PLHFSATPRL FHSHSSGSHQ PDKDQDFHCK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G094200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021633189.1 | 0.0 | transcription factor TCP13-like | ||||
TrEMBL | A0A2C9WKP4 | 0.0 | A0A2C9WKP4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010816m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 4e-51 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G094200.1.p |