PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G092500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 336aa    MW: 37279.5 Da    PI: 8.7506
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G092500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-1675120147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W   Ed +l+++v+++G+ +W++Ia++++ gR++k+c++rw++ 
  Manes.01G092500.1.p  75 RGHWKVAEDAKLKELVALHGPQNWNRIAEKLQ-GRSGKSCRLRWFNQ 120
                          899*****************************.***********996 PP
2Myb_DNA-binding53.55.4e-17127170146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          + ++++eE+e+l  a++  G++ W++Iar ++ gRt++ +k++w+ 
  Manes.01G092500.1.p 127 KSAFSKEEEERLMAAHRICGNK-WSLIARLIP-GRTDNAVKNHWHV 170
                          5789******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.34870121IPR017930Myb domain
SMARTSM007174.4E-1474123IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-2675168IPR009057Homeodomain-like
PfamPF002494.7E-1675120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2576128IPR009057Homeodomain-like
CDDcd001671.11E-1278119No hitNo description
PROSITE profilePS5129425.57122176IPR017930Myb domain
SMARTSM007171.9E-13126174IPR001005SANT/Myb domain
PfamPF002495.9E-14127169IPR001005SANT/Myb domain
CDDcd001671.12E-10129169No hitNo description
Gene3DG3DSA:1.10.10.604.1E-20129175IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
METLTDMGSQ DICRSEPSDN KEAHHHLMSS SLLVPKCCDG SLAANQNSSF DDKDKEDKND  60
ECSRISGQSS KLWARGHWKV AEDAKLKELV ALHGPQNWNR IAEKLQGRSG KSCRLRWFNQ  120
LDPRINKSAF SKEEEERLMA AHRICGNKWS LIARLIPGRT DNAVKNHWHV IMARKYREQS  180
LAYRRRKQTN DAKRRVQDGS GSASRDTPMN EVVAKSLNLC SGRIIEPSHH FPLAGFKSEG  240
FYDFTSSEGA GRSGHKSSDI VSQMEHCSFA VLQNKQQSSN HHFSAGFSYS MASPRSQVSE  300
PSSSSSLSFA ENNATSDSVT TISPPFIDFL GVGAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30751757107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G092500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593905.10.0transcription factor MYB1-like
TrEMBLA0A2C9WJC30.0A0A2C9WJC3_MANES; Uncharacterized protein
STRINGcassava4.1_029396m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.17e-68myb domain protein 105