PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G092100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Dof
Protein Properties Length: 503aa    MW: 54654.1 Da    PI: 5.9546
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G092100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.4e-39147206261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s
  Manes.01G092100.1.p 147 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNS 206
                          7899******************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-30145204IPR003851Zinc finger, Dof-type
PfamPF027014.0E-32149205IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.975151205IPR003851Zinc finger, Dof-type
PROSITE patternPS013610153189IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MSETKDPAIK LFGKTIPLPD NSHGGTTTTA MTCSGAAESV VVDVDSQDQD QDQDQDSYLE  60
DSNTKGDGEE RESDKDEVGE KTTESKQELG AQNVTSDESS NPDANSGISG ENHKTASVEK  120
EDAALKTSKT EEQQSDTSNS QEKTKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN  180
CQRYWTAGGT MRNVPVGAGR RKNKNSATHY RHITVSEALQ NVQTDIPNGI HHPALKTNGT  240
VLNFGSDTPL HESMASVLNL ADKTMQNCTR NGFHKPEALR IPVSYGSVVN GEGLSNGSSV  300
MASSSKDEAS KNGSCQGCPP QIPCFPGTPW PYPWNPAQWN TPVPPPAFCP PGFPMPFYPA  360
AAYWGCTVPG NWNMPWIPHP SSPNQAALSS GPNSPTLGKH SRDENTQRTN NSGEEPVKEC  420
NAERCLWIPK TLRIDDPEEA AKSSIWTTLG IKNDKADSIG GRGLFKAFES KSNEKNHKTE  480
TSPVLQANPA ALSRSLKFQE SS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G092100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632886.10.0cyclic dof factor 2-like
RefseqXP_021632895.10.0cyclic dof factor 2-like
RefseqXP_021632905.10.0cyclic dof factor 2-like
TrEMBLA0A2C9WLT40.0A0A2C9WLT4_MANES; Uncharacterized protein
STRINGcassava4.1_006065m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-114cycling DOF factor 2