PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G083400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 135aa MW: 15232.1 Da PI: 10.0973 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 67 | 115 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a++ ++g Manes.01G083400.1.p 67 YRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALTIKG 115 9****998.**********843...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.8E-13 | 65 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-38 | 66 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-33 | 66 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.657 | 66 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-22 | 66 | 124 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.0E-11 | 67 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.80E-33 | 67 | 125 | No hit | No description |
PRINTS | PR00367 | 9.0E-11 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MERSLDMESE AQNNSSSSST ASPFSMNTSS ELEYQKRSKQ DPELKNSDES NKMVKITAEN 60 SRSHPAYRGV RMRQWGKWVS EIREPRKKSR IWLGTYPTAE MAARAHDVAA LTIKGRSAHL 120 NFPELAHELP IPAR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 64 | 123 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G083400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021604874.1 | 4e-93 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q8LBQ7 | 3e-39 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A2C9WJE2 | 1e-93 | A0A2C9WJE2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_034027m | 2e-92 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 8e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G083400.1.p |
Publications ? help Back to Top | |||
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