PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G083100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 198aa MW: 22656.7 Da PI: 6.2938 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.9e-18 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l+d+++ +G ++WktIa + g++R++k+c++rw++yl Manes.01G083100.2.p 19 KGAWTVEEDRKLADYIEVHGAKRWKTIAFKAGLKRCGKSCRLRWLNYL 66 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 28.2 | 4.5e-09 | 72 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE++l+++++k+lG++ ++ gRt++++k++w+++l Manes.01G083100.2.p 72 RGNISDEEEDLILRLHKLLGNR--------LP-GRTDNEIKNYWNSHL 110 7899****************99........**.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.741 | 14 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-14 | 18 | 68 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.09E-23 | 18 | 106 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-16 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-25 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.62E-10 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 14.167 | 71 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-7 | 71 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-7 | 72 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-16 | 74 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MAPCKNSEAS ANCKMVMNKG AWTVEEDRKL ADYIEVHGAK RWKTIAFKAG LKRCGKSCRL 60 RWLNYLRPNI KRGNISDEEE DLILRLHKLL GNRLPGRTDN EIKNYWNSHL SKKINKKEKA 120 SDESPSTQPQ KSITEKTCDA VAAVEEMVEE GSKEEAIPER SFDVNQFLDF SMEGTYDLEW 180 LNKFLQLDED AWLAADN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 17 | 114 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G083100.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021632442.1 | 1e-141 | transcription factor MYB114-like | ||||
Swissprot | Q9SEI0 | 8e-48 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A2C9WK90 | 1e-144 | A0A2C9WK90_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_024299m | 1e-141 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 9e-50 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G083100.2.p |