PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G065000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 597aa    MW: 66393.7 Da    PI: 8.325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G065000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.5e-124893147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g WT+eEd +l + v+++ g+ W++Ia++++  Rt  qc  rw+ +
  Manes.01G065000.1.p 48 KGHWTEEEDYILTESVRRFHGKKWRKIAECLP-QRTVSQCFTRWNRV 93
                         789***************99999*********.***********986 PP
2Myb_DNA-binding55.81e-17100146148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd+ +++ v+++G++ W++Ia+ ++ gR +kqc++rw+++l
  Manes.01G065000.1.p 100 KGTWTKEEDDSIIKSVRKHGPRKWSLIAKSLP-GRLGKQCRERWYNHL 146
                          799*****************************.*************97 PP
3Myb_DNA-binding48.52e-15152194145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT+eE++ l  ++  +G++ W+ Iar ++ gRt++ +k++w+
  Manes.01G065000.1.p 152 KSSWTEEEELTLTYYHGIYGNK-WAEIARFLP-GRTDNAIKNHWN 194
                          578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.1494394IPR017930Myb domain
SuperFamilySSF466896.17E-1646107IPR009057Homeodomain-like
SMARTSM007172.2E-114796IPR001005SANT/Myb domain
PfamPF002492.2E-104893IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2149106IPR009057Homeodomain-like
CDDcd001672.56E-105194No hitNo description
PROSITE profilePS5129429.19795150IPR017930Myb domain
SuperFamilySSF466898.2E-3098193IPR009057Homeodomain-like
SMARTSM007171.4E-1699148IPR001005SANT/Myb domain
PfamPF002496.6E-17100146IPR001005SANT/Myb domain
CDDcd001673.62E-15102146No hitNo description
Gene3DG3DSA:1.10.10.606.7E-25107152IPR009057Homeodomain-like
PROSITE profilePS5129418.701151201IPR017930Myb domain
SMARTSM007173.9E-15151199IPR001005SANT/Myb domain
PfamPF002491.1E-12152194IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-21153201IPR009057Homeodomain-like
CDDcd001672.62E-11154197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MVKVKKEELY DVDFADQIID APPCSVYYGA GDAAFRRRAT GPTRQSTKGH WTEEEDYILT  60
ESVRRFHGKK WRKIAECLPQ RTVSQCFTRW NRVLNPAIVK GTWTKEEDDS IIKSVRKHGP  120
RKWSLIAKSL PGRLGKQCRE RWYNHLDPAI RKSSWTEEEE LTLTYYHGIY GNKWAEIARF  180
LPGRTDNAIK NHWNCIVKKK LDSDSPACAE DLHKVASLNF CSCAMKTESK EVKEERQNPD  240
ELVSVHGRMG LKCSADTGAS KLLCRLVNGE QNQLEAKHGA TFKTSVGMDE LMNGIHFSDV  300
GANGSVAMIE SGRNNSKHDI LNSSMELRFD VSASTRPCCS ALDAAVPFTL NSTKSPNRLR  360
GHEFCILHSE FGNKTESSLS YTSTSATGED KSVTEKEGKF PKLNVHMQSV DSNEQRLHHE  420
SAHPKDLVTD LDGAQPSIIH HHVLHANSPF SCSTPSNCAR YAFVSVNSPE SILRNSARTF  480
KNTPSIIRKR AYKEAGVDKS SDVDKSSDVA STPSWKISCT NSTSEDINNA DIPNGKQGCL  540
SFFCKPGSSL AVKSLRRQLD YAFEMERDAA AAKCGNPFPA TASPNIEFFS NAMVIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-58482016159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-58482016159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G065000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615544.10.0transcription factor MYB28-like
TrEMBLA0A2C9WI930.0A0A2C9WI93_MANES; Uncharacterized protein
STRINGcassava4.1_022173m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-70myb domain protein 3r-5