PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G038900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 240aa    MW: 27810.8 Da    PI: 7.8049
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G038900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-193993256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         +++++f++eq++ Le+ Fe++ ++  +++ +LA +lgL+ rq+ +WFqNrRa++k
  Manes.01G038900.1.p 39 KNKRRFSDEQIRLLESIFESETKLEPRKKLQLAGELGLQPRQIAIWFQNRRARWK 93
                         67789*************************************************9 PP
2HD-ZIP_I/II120.21e-3840131293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          +krr+s+eq++lLE+ Fe+e+kLep++K +la eLglqprq+a+WFqnrRAR+k+k++E++y++L+++yd+l++  e+L++e ++L  +l
  Manes.01G038900.1.p  40 NKRRFSDEQIRLLESIFESETKLEPRKKLQLAGELGLQPRQIAIWFQNRRARWKSKRIEQEYKTLRAKYDNLASCFESLKNERQSLLIQL 129
                          79************************************************************************************9998 PP

          HD-ZIP_I/II  92 ke 93 
                          ++
  Manes.01G038900.1.p 130 QK 131
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-182895IPR009057Homeodomain-like
PROSITE profilePS5007117.3463595IPR001356Homeobox domain
SMARTSM003891.3E-173899IPR001356Homeobox domain
PfamPF000467.7E-173993IPR001356Homeobox domain
CDDcd000861.85E-143996No hitNo description
Gene3DG3DSA:1.10.10.604.2E-1940102IPR009057Homeodomain-like
PRINTSPR000311.7E-56675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000311.7E-57591IPR000047Helix-turn-helix motif
PfamPF021831.4E-1295136IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSNQLDGRGY SPETPDERLE NFACQQLSQS PRKKKNIAKN KRRFSDEQIR LLESIFESET  60
KLEPRKKLQL AGELGLQPRQ IAIWFQNRRA RWKSKRIEQE YKTLRAKYDN LASCFESLKN  120
ERQSLLIQLQ KLNELLDEKC DGNRTCKGSE GNNNLLASNN GNINNDPKAQ QGLYDTEFMC  180
SQNNKSRDIE HSGDEGHELL NHQEYTDSSL ASHNQWCSFD SGSQFYLSSS SSQWFNFWI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G038900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617135.11e-176homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A2C9WI141e-175A0A2C9WI14_MANES; Uncharacterized protein
STRINGcassava4.1_015051m1e-175(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-37homeobox 7