PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G035100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family G2-like
Protein Properties Length: 359aa    MW: 40339.8 Da    PI: 8.8492
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G035100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.43.3e-282073155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprl+WtpeLH+rFvea++qLGG++kAtPk+++++m+v+ Ltl+h+kSHLQ YRl
  Manes.01G035100.1.p 20 KPRLKWTPELHHRFVEALRQLGGEDKATPKSLMRVMGVPRLTLYHLKSHLQ-YRL 73
                         79************************************************9.776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.3141777IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-281876IPR009057Homeodomain-like
SuperFamilySSF466892.51E-131971IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-202072IPR006447Myb domain, plants
PfamPF002492.5E-62270IPR001005SANT/Myb domain
PfamPF143791.6E-21134181IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGFQNLQNQN MNLVLSTDPK PRLKWTPELH HRFVEALRQL GGEDKATPKS LMRVMGVPRL  60
TLYHLKSHLQ YRLAKRHPTE LQSEFQSQSQ SQSQGSIENK KVLLDADYKE IQISNPALRG  120
GISEGNQSPL NESFQIAQVL QMQMEVQRKI HEQIEVQRHL QVRIEAQGKY LQSVLKKAQE  180
TLSGYSSSSL GIELAKAELS RLVSMVNNEC RSPSISELTE IEGSSLKGTE RKKMRGTVCS  240
MESSLTSSES SGRKEDKQLT NEFGNTHKSN PASIELPLMD IHPREKPWNS GTSDQVKKRT  300
CCTISDGICV EQPPVKRSKI GDRLRIFDLN SHCQNEFESG SKTIDLNCKG IEQVNGQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-162075258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-162075258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-162075157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-162075157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-162075157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-162075157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-162075258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-162075258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-162075258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-162075258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-162075258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-162075258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G035100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615469.10.0myb family transcription factor PHL8-like isoform X2
SwissprotF4I2749e-80PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2C9WJT50.0A0A2C9WJT5_MANES; Uncharacterized protein
STRINGcassava4.1_010425m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.12e-76G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]