PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G035000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 473aa MW: 51326.7 Da PI: 7.6571

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G035000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.3	4.7e-40	143	203	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss Manes.01G035000.1.p 143 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSS 203 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	130	200	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-32	145	201	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.947	147	201	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	149	185	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MSGFKDSTIK LFGKTIPLPL FHRPPHLSSP NESSSAAAVG PVQLQDSSDE NPTSSPENTF 60 SMEQEAHQWN RESSEKDATD DKQEGTTSDH VIEDSKDPTT SSDINEKLLK TCSAEREASP 120 QKSSKNGEQS ETSNSQEKTL KKPDKILPCP RCNSMDTKFC YYNNYNVNQP RHFCKNCQRY 180 WTAGGTMRNV PVGAGRRKNK SSSSAAAAAH YRQIMVSEAL RTSTSVLNFG SDSPLCESVA 240 SVLNLSDKTQ NNIRNGYHRP EQSILISCGG GASDNGDDRA SGSSVTVSNS SEKKGNCGFT 300 PEPQVPSFAG PPWSYPWSSP MAPPTFCPSG FPVSFYPAPA YWGCSVPTPW NVAPCLSPQS 360 LSLNHHCFTS ALGKHTREGK ILNPTHSESP SESSVLIPKT LRIDDPSEAA KSSIWATLGI 420 KSSDKTNLNG GRSLFKGFES KNEDRNYRAE TSPLLHANPA ALSRSLKFQE ST*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MSGFKDSTIK LFGKTIPLPL FHRPPHLSSP NESSSAAAVG PVQLQDSSDE NPTSSPENTF  60
SMEQEAHQWN RESSEKDATD DKQEGTTSDH VIEDSKDPTT SSDINEKLLK TCSAEREASP  120
QKSSKNGEQS ETSNSQEKTL KKPDKILPCP RCNSMDTKFC YYNNYNVNQP RHFCKNCQRY  180
WTAGGTMRNV PVGAGRRKNK SSSSAAAAAH YRQIMVSEAL RTSTSVLNFG SDSPLCESVA  240
SVLNLSDKTQ NNIRNGYHRP EQSILISCGG GASDNGDDRA SGSSVTVSNS SEKKGNCGFT  300
PEPQVPSFAG PPWSYPWSSP MAPPTFCPSG FPVSFYPAPA YWGCSVPTPW NVAPCLSPQS  360
LSLNHHCFTS ALGKHTREGK ILNPTHSESP SESSVLIPKT LRIDDPSEAA KSSIWATLGI  420
KSSDKTNLNG GRSLFKGFES KNEDRNYRAE TSPLLHANPA ALSRSLKFQE ST*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G035000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021622668.1	0.0	cyclic dof factor 1-like isoform X1
TrEMBL	A0A2C9WHG7	0.0	A0A2C9WHG7_MANES; Uncharacterized protein
STRING	cassava4.1_006895m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-86	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Manes.01G035000.1.p