PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.01G034800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 420aa MW: 46354.4 Da PI: 7.3259 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.8e-16 | 118 | 163 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++ Manes.01G034800.1.p 118 RGHWRPAEDTKLKELVAHYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 163 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.3 | 3.5e-18 | 170 | 213 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ Manes.01G034800.1.p 170 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 213 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.325 | 113 | 164 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-14 | 117 | 166 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.28E-28 | 118 | 211 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.5E-16 | 118 | 163 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-26 | 119 | 171 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.64E-13 | 121 | 162 | No hit | No description |
PROSITE profile | PS51294 | 27.592 | 165 | 219 | IPR017930 | Myb domain |
SMART | SM00717 | 8.2E-15 | 169 | 217 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-15 | 170 | 212 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-21 | 172 | 218 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.56E-12 | 172 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 420 aa Download sequence Send to blast |
MANNCVIYST SEKNPNCFSP SSSSSSSGMV LVDIASLSLS PSYGVIPPSS SSSSSSMETG 60 RGSWVFSLMG KGSDCSDVFL ENNDTENHNA NSNDENPNNE NINSGKETDS GQSKLCARGH 120 WRPAEDTKLK ELVAHYGPQN WNLIAEKLEG RSGKSCRLRW FNQLDPRINR RAFTEEEEER 180 LMQAHRLYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR EQSSAHRRRK LTQSVYRRSE 240 ETSSFLCRDP ATRSEPPPPP PPTYCLNIPN AVGLTNLSPY PVGPFNGGVD YGLNGSRIQL 300 PLTGFCAQQT PFDFFPGPKS NDMIGSIFSH RPADEPHNSS FYPQRHHDTM AMQQSNYQTP 360 YYLSASTPPP PPPPPPPQVS ATEPSPSSSS SSVAENTRTV HFETIPPPPF IDFLGVGAT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-34 | 118 | 218 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.01G034800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM034633 | 6e-85 | KM034633.1 Jatropha curcas clone JcMYB012 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021630084.1 | 0.0 | myb-like protein Q | ||||
TrEMBL | A0A2C9WHH2 | 0.0 | A0A2C9WHH2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_009655m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 4e-76 | myb domain protein 105 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.01G034800.1.p |