PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G034600.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 354aa    MW: 39830 Da    PI: 8.4391
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G034600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.81.9e-201053245
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         + en+  rq t+ kR++gi+KKA+ELS+LCd+++ +++fsstgk
  Manes.01G034600.2.p 10 KLENTYGRQATYGKRKHGIMKKAKELSILCDIDIILLMFSSTGK 53
                         6799**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.563153IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-26160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-24294IPR002100Transcription factor, MADS-box
CDDcd002662.52E-22281No hitNo description
PRINTSPR004042.7E-16323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-161254IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRVKLKIKK LENTYGRQAT YGKRKHGIMK KAKELSILCD IDIILLMFSS TGKPSMCKGK  60
RSIEEVIAKF AQLTPQERAK RKLESLEVLK KTFKKLDHDV NIPEFLGTSS QTIEDLSNQS  120
RLLQNQLSEV HKRLSYWSNL DKINNTEYLG QLENSLRESL NRIQAHKEYL GKQQLMSLEC  180
NSQFQSGTHV PFRIGTEQHL PPMPWIPNND SQQIVLPEDP NLISNWDVEC SASSSFGSYS  240
GYFGTRKVSE LSNSSQENGV NGIFNELSGS ASLRLQLSGQ YPYLPYNLNL MSDAKFQSAT  300
EMNLLQSTVD FHVNGSFEAP KHGYDASPGS WASSSGQCAV TMFDEHLYSR QPN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G034600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626893.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_021626900.10.0agamous-like MADS-box protein AGL30 isoform X2
SwissprotQ1PFA41e-106AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A2C9WIW40.0A0A2C9WIW4_MANES; Uncharacterized protein
TrEMBLA0A2C9WJZ30.0A0A2C9WJZ3_MANES; Uncharacterized protein
STRINGcassava4.1_010506m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-78AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]