PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G034600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 359aa    MW: 40470.8 Da    PI: 8.4344
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G034600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.81.9e-201558245
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         + en+  rq t+ kR++gi+KKA+ELS+LCd+++ +++fsstgk
  Manes.01G034600.1.p 15 KLENTYGRQATYGKRKHGIMKKAKELSILCDIDIILLMFSSTGK 58
                         6799**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-26665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.563658IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-24799IPR002100Transcription factor, MADS-box
CDDcd002662.22E-22786No hitNo description
PRINTSPR004042.8E-16828IPR002100Transcription factor, MADS-box
PfamPF003192.2E-161759IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MQSYMMGRVK LKIKKLENTY GRQATYGKRK HGIMKKAKEL SILCDIDIIL LMFSSTGKPS  60
MCKGKRSIEE VIAKFAQLTP QERAKRKLES LEVLKKTFKK LDHDVNIPEF LGTSSQTIED  120
LSNQSRLLQN QLSEVHKRLS YWSNLDKINN TEYLGQLENS LRESLNRIQA HKEYLGKQQL  180
MSLECNSQFQ SGTHVPFRIG TEQHLPPMPW IPNNDSQQIV LPEDPNLISN WDVECSASSS  240
FGSYSGYFGT RKVSELSNSS QENGVNGIFN ELSGSASLRL QLSGQYPYLP YNLNLMSDAK  300
FQSATEMNLL QSTVDFHVNG SFEAPKHGYD ASPGSWASSS GQCAVTMFDE HLYSRQPN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G034600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626893.10.0agamous-like MADS-box protein AGL30 isoform X1
SwissprotQ1PFA41e-106AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A2C9WIW40.0A0A2C9WIW4_MANES; Uncharacterized protein
STRINGcassava4.1_010506m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-78AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]