PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G031600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 509aa    MW: 54890.5 Da    PI: 8.6506
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G031600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.2e-33230286259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Manes.01G031600.1.p 230 DDGYNWRKYGQKQVKGSECPRSYYKCTQPTCPVKKKVERSL-DGQVTEIIYKGQHNHQ 286
                          8****************************************.***************7 PP
2WRKY106.51.3e-33400458159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+a+dp++v++tYeg+Hnh+
  Manes.01G031600.1.p 400 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSAGCRVRKHVERAATDPRAVITTYEGKHNHD 458
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-29217288IPR003657WRKY domain
SuperFamilySSF1182901.06E-25227288IPR003657WRKY domain
SMARTSM007741.2E-35229287IPR003657WRKY domain
PROSITE profilePS5081123.732230288IPR003657WRKY domain
PfamPF031063.4E-25230286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-37386460IPR003657WRKY domain
SuperFamilySSF1182901.44E-29392460IPR003657WRKY domain
PROSITE profilePS5081138.836395460IPR003657WRKY domain
SMARTSM007744.6E-39400459IPR003657WRKY domain
PfamPF031063.3E-26401458IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MADNGSRHPS PPVSSSSLPP SSSKSSSATS ARPTTIALPP RSSNESFFTS GLGVGFSPGP  60
MTLVSSLFSD SDDFKSFSQL LAGAMDSPAA NSNNKSPLPP VPQADKNSAA NVSRPANLSI  120
APPSQMFTVP RGLSPMVFLD SPALGLLSPE GNIGMRRQQA LAQVTAQAAQ VHSNMHIQAH  180
YSSSLPSAPA TSSTPLSSIP DPTASVQESS DFSPDQRSQA SSLVVDKPTD DGYNWRKYGQ  240
KQVKGSECPR SYYKCTQPTC PVKKKVERSL DGQVTEIIYK GQHNHQAPQP KRAKDAGSLN  300
GNSSNQSKFE LASQFQSGNV NKSKDRKDQE SSQATHELLS GTSDSEEVGD TETGVDENDE  360
DEPDPKRRNT DVKVADPASS HRTLTESRII VQTTSEVDLL DDGYRWRKYG QKVVKGNPYP  420
RSYYKCTSAG CRVRKHVERA ATDPRAVITT YEGKHNHDVP AAKGSSHSTA NSNSSELRQQ  480
NVEKNALDHR TKNQPPITRL LLKEEQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-42230461878Probable WRKY transcription factor 4
2lex_A2e-42230461878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G031600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626413.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-176WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2C9WIN70.0A0A2C9WIN7_MANES; Uncharacterized protein
STRINGcassava4.1_005912m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-143WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]