PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G026100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family YABBY
Protein Properties Length: 229aa    MW: 25281 Da    PI: 8.8102
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G026100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY145.45.9e-45101522163
                YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 
                          d++  se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l  ++         +   l+ +  +++l     ++   ++ + +++s
  Manes.01G026100.1.p  10 DLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLS---------TRPPLQGQCLDHQL---TLQGFFSDVRKCQSSS 87 
                          77899*************************************975532.........33333333333333...2333223333333333 PP

                YABBY  92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                          +s+s+       +++  +p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafs+aaknWa +
  Manes.01G026100.1.p  88 SSSST-------SSEPLSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARY 152
                          33333.......44556799999***********************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.5E-5514152IPR006780YABBY protein
SuperFamilySSF470951.96E-896150IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.8E-5106151IPR009071High mobility group box domain
CDDcd013901.56E-5113149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MNLEEKVTMD LVPPSEHLCY VRCNFCNTVL AVGIPCKRLL DTVTVKCGHC SNLSFLSTRP  60
PLQGQCLDHQ LTLQGFFSDV RKCQSSSSSS STSSEPLSPK APFVVKPPEK KHRLPSAYNR  120
FMKEEIQRIK AANPEIPHRE AFSTAAKNWA RYIPNSAAGS VSGISNSVSK SPSLPPPSPY  180
ILANSIAFLR LHTSRFHNTG HDSNTNKLFA ILSVDFIVYC RIDEEMNV*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G026100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021613416.11e-112protein CRABS CLAW isoform X2
SwissprotQ76EJ03e-67YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A2C9WH791e-168A0A2C9WH79_MANES; Uncharacterized protein
STRINGcassava4.1_023863m1e-168(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-63YABBY family protein