PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G020700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family TCP
Protein Properties Length: 388aa    MW: 44030.4 Da    PI: 7.8677
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G020700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.81.6e-411252813135
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec.....e 74 
                           k+drhski+T++g+RdRR+Rls+++a++fFdLqd+L fdk+skt+eWLl qakpaik+l +              s+ss sec     +
  Manes.01G020700.1.p 125 CKRDRHSKIYTAQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLMQAKPAIKKLSSGlpqfnyscsvhakSASSTSECevvsrN 214
                          69***********************************************************999*9*99999987655555566333220 PP

                  TCP  75 aesssssasnsssg..............kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                                 ++   ++              +++ +++ +k +++++ ++  +a+esr karararertrek +++  
  Manes.01G020700.1.p 215 -----DDEA---AAikatskvsnaknssSSCVTNKGKKAKPSRKIAFDPVARESRDKARARARERTREKLQNRRI 281
                          .....1111...1122333344455444556666544444444444677778******************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136933.451126184IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-46126278IPR005333Transcription factor, TCP
PROSITE profilePS5137011.753258275IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MFPSSNNGND PICYSDQQQV YNRPFFNDIT SNSKHEELPF SCFHFPSPFL PYDQLDFQDH  60
DVDLLHQNHD LFLHHPPLIR ALASTSCTVA SSAETFLDMV RSNQNDANKK SCSASSDQIP  120
RKRSCKRDRH SKIYTAQGPR DRRMRLSLKV AREFFDLQDK LCFDKASKTV EWLLMQAKPA  180
IKKLSSGLPQ FNYSCSVHAK SASSTSECEV VSRNDDEAAA IKATSKVSNA KNSSSSCVTN  240
KGKKAKPSRK IAFDPVARES RDKARARARE RTREKLQNRR IDESKLSEEA KDLEFNQLNC  300
WSPFEIGEES GKQSHPMNPN SLEIPTQEQD RLLVTSENMI DDSMVIMEKW SACCSSINNH  360
LYNAAMPQEH QITDLQSFFK SLEAPYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-12131184154Putative transcription factor PCF6
5zkt_B1e-12131184154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G020700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623651.10.0transcription factor TCP12
RefseqXP_021623659.10.0transcription factor TCP12
RefseqXP_021623667.10.0transcription factor TCP12
RefseqXP_021623676.10.0transcription factor TCP12
TrEMBLA0A251LM830.0A0A251LM83_MANES; Uncharacterized protein
STRINGcassava4.1_032556m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.29e-26TCP family protein