PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G012000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 400aa    MW: 45007.6 Da    PI: 5.549
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G012000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.99.9e-091759440
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         r C+ + +k++++fC  ++ +lC++C ++ H+       H++v
  Manes.01G012000.1.p 17 RPCDGCFSKRARWFCAADDAFLCRSCEESVHSAnqlagrHERV 59
                         67*****************************667888888876 PP
2CCT66.86e-23344387144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRYkeKr+tR+F+KkirYe+R+ +Ae+RpR+KGrFvk++
  Manes.01G012000.1.p 344 REARVLRYKEKRRTRLFSKKIRYEVRRLNAEKRPRMKGRFVKRT 387
                          9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.481461IPR000315B-box-type zinc finger
SMARTSM003361.5E-111461IPR000315B-box-type zinc finger
CDDcd000213.99E-91761No hitNo description
PfamPF006437.9E-71759IPR000315B-box-type zinc finger
PfamPF062031.5E-17344386IPR010402CCT domain
PROSITE profilePS5101715.864344386IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MINERKAANA LAGKIVRPCD GCFSKRARWF CAADDAFLCR SCEESVHSAN QLAGRHERVR  60
LESVVSPPAW LQGFNRKART PRHKNNKSLL ARQQLEHEEE FLMNPLLLVP EIGNEEESNI  120
VADEDEDQVP CRVPVFDPFA AELCVDDMIT YEGTEIAAMG NEEGNVIFDD SGHGGTASDL  180
DNLPEFLPSD MDLGEFAADI ENLLGSGLED SSPDTKASRV LDSKDEGDEK FSYEYKVVKV  240
KDEQDQLEAI FDWDFNYESP TTVEEMNCHG NKKEMKRNVF LRLNYEAIIN AWASHGSPWT  300
TGPRPELNPD GCWPHCMGMC CNARGRHPYV AGVGGGAGGG NAGREARVLR YKEKRRTRLF  360
SKKIRYEVRR LNAEKRPRMK GRFVKRTSFM GTAFPYINR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354370RRTRLFSKKIRYEVRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G012000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622353.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2C9WJA10.0A0A2C9WJA1_MANES; Uncharacterized protein
STRINGcassava4.1_028288m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-75B-box type zinc finger protein with CCT domain