PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G001900.4.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 664aa    MW: 73302.6 Da    PI: 5.6021
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G001900.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.22.5e-1413623687
             trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                         +k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f+qlea
  Manes.01G001900.4.p 13 RKLAEMGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSQLEA 62
                         57899******************************866665..*******85 PP
2trihelix104.39e-33380465187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k evlaLi++r+ +e+r+++   k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  Manes.01G001900.4.p 380 RWPKAEVLALIKLRSGLESRYQEVGPKGPLWEEISAGMHRMGYKRNAKRCKEKWENINKYFKKVKESDKKR-PEDAKTCPYFHELDA 465
                          8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-101263No hitNo description
PfamPF138375.1E-23379466No hitNo description
CDDcd122033.32E-31379444No hitNo description
PROSITE profilePS500906.655379437IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MTIVFYWVGV LHRKLAEMGY KRSAKKCKEK FENVHKYYKR TKEGRAGRQD GKSYRFFSQL  60
EALHNINSNT STTSLNLVSA SQPVATTATT LDVAPVSVGI PMPVSSVRIP PSTVGMSSSS  120
SMFPPDLAAT MAPAVPVPPR PLAGISFSST SDGSSSSSGS HEDDEDDDDD DDDVDKPTSV  180
AAGSSRKRKR HSSKGGTRRM MEFFEGLMKH VIQKQEAMQQ SFLEAIEKRE HDRMIREEAW  240
KRQELARQSR ENELVAQERA IYASRDAAII AFLQKITGQT IQLPSPVTIP AVPRPAPPSQ  300
PQTVSLAPVV TVSTQQPPPP QPQAQPDRSP LPQQDKQQQH QVVHHQQSSI SSEVAVAFPE  360
QEVPPQEIGN IGSLEPTSSR WPKAEVLALI KLRSGLESRY QEVGPKGPLW EEISAGMHRM  420
GYKRNAKRCK EKWENINKYF KKVKESDKKR PEDAKTCPYF HELDALYRKK ILGSSSGGAG  480
DGSTTSSSFA NLNRPPESQQ QASMISDPLP PTKPESRSEV SATVLVQASD SQTKMGSGAD  540
INTVLPGSLF GEGNGGATKP EDIVKEFIKL QGMQRQQQIQ LMLHDYEKME EGNESDNTEQ  600
EDNEDGMEDV DCNDNDEDED GVEDDDERQE ERKMAYKIEF QRQNTNASNG GGNGTPSFLA  660
VVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12028KRSAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G001900.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021624875.10.0trihelix transcription factor GTL1 isoform X4
TrEMBLA0A2C9WIS30.0A0A2C9WIS3_MANES; Uncharacterized protein
STRINGcassava4.1_002081m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-48Trihelix family protein