PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G001900.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Trihelix | ||||||||
Protein Properties | Length: 652aa MW: 71862 Da PI: 5.7163 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 45.2 | 2.5e-14 | 13 | 62 | 36 | 87 |
trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea Manes.01G001900.3.p 13 RKLAEMGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSQLEA 62 57899******************************866665..*******85 PP | |||||||
2 | trihelix | 104.3 | 8.7e-33 | 380 | 465 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r+++ k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a Manes.01G001900.3.p 380 RWPKAEVLALIKLRSGLESRYQEVGPKGPLWEEISAGMHRMGYKRNAKRCKEKWENINKYFKKVKESDKKR-PEDAKTCPYFHELDA 465 8*********************************************************************8.99999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.1E-10 | 12 | 63 | No hit | No description |
CDD | cd12203 | 2.58E-31 | 379 | 444 | No hit | No description |
Pfam | PF13837 | 5.0E-23 | 379 | 466 | No hit | No description |
PROSITE profile | PS50090 | 6.655 | 379 | 437 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MTIVFYWVGV LHRKLAEMGY KRSAKKCKEK FENVHKYYKR TKEGRAGRQD GKSYRFFSQL 60 EALHNINSNT STTSLNLVSA SQPVATTATT LDVAPVSVGI PMPVSSVRIP PSTVGMSSSS 120 SMFPPDLAAT MAPAVPVPPR PLAGISFSST SDGSSSSSGS HEDDEDDDDD DDDVDKPTSV 180 AAGSSRKRKR HSSKGGTRRM MEFFEGLMKH VIQKQEAMQQ SFLEAIEKRE HDRMIREEAW 240 KRQELARQSR ENELVAQERA IYASRDAAII AFLQKITGQT IQLPSPVTIP AVPRPAPPSQ 300 PQTVSLAPVV TVSTQQPPPP QPQAQPDRSP LPQQDKQQQH QVVHHQQSSI SSEVAVAFPE 360 QEVPPQEIGN IGSLEPTSSR WPKAEVLALI KLRSGLESRY QEVGPKGPLW EEISAGMHRM 420 GYKRNAKRCK EKWENINKYF KKVKESDKKR PEDAKTCPYF HELDALYRKK ILGSSSGGAG 480 DGSTTSSSFA NLNRPPESQQ QASMISDPLP PTKPESRSEV SATVLVQASD SQTKMGSGAD 540 INTVLPGSLF GEGNGGATKG MQRQQQIQLM LHDYEKMEEG NESDNTEQED NEDGMEDVDC 600 NDNDEDEDGV EDDDERQEER KMAYKIEFQR QNTNASNGGG NGTPSFLAVV Q* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 28 | KRSAKKCKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G001900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021624857.1 | 0.0 | trihelix transcription factor GTL1 isoform X2 | ||||
TrEMBL | A0A2C9WGG7 | 0.0 | A0A2C9WGG7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_002081m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-48 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G001900.3.p |