PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G001000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 431aa    MW: 48052.6 Da    PI: 7.554
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G001000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.81.6e-31109213199
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    ++ + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  
  Manes.01G001000.1.p 109 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNDKGLLLNFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFHRGv 198
                          89***************************9555568889************************************************655 PP

                          SS.SEE..EEEEE-S CS
                   B3  86 gr.sefelvvkvfrk 99 
                          g+  + +l++ ++r+
  Manes.01G001000.1.p 199 GEtGKDHLYIDWRRR 213
                          777888899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-42101221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-30106214IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-27107208No hitNo description
PfamPF023625.9E-29109213IPR003340B3 DNA binding domain
PROSITE profilePS5086314.522109214IPR003340B3 DNA binding domain
SMARTSM010194.0E-24109214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDFGSGFSEE DQMSKGKIPF SYSSSSSPSS SSSQHKGNLL PLSQIYDNPK PQMGSWLGSK  60
YDPVQEDTSR FNDSGAAVKL ELMDVNDEQK QGIQEESASV AVIEKEHMFD KVVTPSDVGK  120
LNRLVIPKQH AEKYFPLDSS TNDKGLLLNF EDRTGKAWRF RYSYWNSSQS YVMTKGWSRF  180
VKDKKLDAGD IVSFHRGVGE TGKDHLYIDW RRRPDAPDTT SHNPQHRHQQ HHHFSSIPWS  240
PLLMRPPMVP MMRRDHLHFS NPDRNAYYNS GGGGGSYYGY GYNSCNYSNM NANHCPPSGT  300
IIYRRSTAPQ QLGMGMVQWQ QQGVGGVVEP MVYESVPVVQ GKAAAKRLRL FGVNMDCPIT  360
DSEECDELSS ATAIPPPHHA TTALQAPQIS SSSHHALQLR LYNGTPLPPI TSSTQFFHKG  420
KSSTSLDLDI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-651042143114B3 domain-containing transcription factor NGA1
5os9_B2e-651042143114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G001000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618982.10.0B3 domain-containing transcription factor NGA1-like
TrEMBLA0A2C9WGT10.0A0A2C9WGT1_MANES; Uncharacterized protein
STRINGcassava4.1_022877m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-70B3 family protein