PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000948645
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YA
Protein Properties Length: 179aa    MW: 19650.1 Da    PI: 11.055
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000948645genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.56e-301166258
      CBFB_NFYA  2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                    p+YVNaKQy++I++RRq+Rak+  e++  ++ rkpy+heSRh+hA+rRpRg+gGrF
  MDP0000948645 11 GPIYVNAKQYHGIIRRRQSRAKAVIENRA-ARLRKPYMHESRHRHAMRRPRGCGGRF 66
                   69***************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-32869IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.387969IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-231234IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-261266IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-234366IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MLPLNLTTDE GPIYVNAKQY HGIIRRRQSR AKAVIENRAA RLRKPYMHES RHRHAMRRPR  60
GCGGRFLNTK TMNNGNKGTE GKQGGDGQLF RFSGSQSPEV LQSDSGTLNS SKETNGSSSN  120
ISGSEVSSMY SRGDLDRFSI NHLGPSLHSL SNMMDSARGM VIPTKWVAAG DNRCNLKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-191074266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15059RHRHAMRRPR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391985.11e-128nuclear transcription factor Y subunit A-10-like
SwissprotQ9M9X41e-43NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A498I4M81e-127A0A498I4M8_MALDO; Uncharacterized protein
STRINGXP_008351509.11e-130(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.12e-34nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]