PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000945004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 684aa MW: 74992.8 Da PI: 5.875 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 424.4 | 9.4e-130 | 298 | 667 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 lv+lL++c+ea+ ++ +++++++a+l elasp+g+++ R ay+teAL+ r++r +++++++ +p++ +++++++ + l+l+++vsPi+kf h+ MDP0000945004 298 LVSLLTACVEAIGLKNIAAINHFIAKLGELASPKGSAISRXSAYYTEALSLRVTRLWPHVFQINAPRKFDRRDEDSGI-ELRLLNQVSPIPKFVHF 392 6899*****************************************************************976666665.569************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+L sR+++p ++RiTg+g+ sk+el+etg+rLa fA +l++pfef++ v++rled++l+ MDP0000945004 393 TSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLVSRTNPPSHVRITGIGE----SKQELNETGDRLAGFAGALNLPFEFHP-VVDRLEDVRLW 483 *****************************************************....***************************.7********** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 +L+vk++E++aVn+v+qlh++l +++ + +++L l++s++P++v ++eqea+hn++++ +r++++l+yysa+fds+ ++lp es++rikvE++ MDP0000945004 484 MLHVKEHESVAVNCVFQLHKTLYDTTGGAL--RDFLGLIRSTNPTLVLMAEQEAEHNESKLETRVSNSLKYYSAIFDSIGSSLPLESQARIKVEEM 577 **********************77765555..89************************************************************** PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaWr 374 +++ei+n++aceg++r erhe++ekWr+ +e+ GF+ v ++e+++ q + ll++++s+ y+v+++ ++l+l W+d+pL++vSaW+ MDP0000945004 578 -FAQEIRNIIACEGSDRLERHESFEKWRKLMEQEGFRCVGITEREMLQSQFLLKMYASENYTVKKQekngaAEALTLSWMDQPLYTVSAWT 667 .********************************************************999****765666667889**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.482 | 272 | 642 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-127 | 298 | 667 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 684 aa Download sequence Send to blast |
MLAGCSSSTL LSPRHRLRSE AAAQLQACSF QLPSMSTQRL DLPCSFPRKD TSRSQPIRPV 60 GLSVEKSIDS KAGGCSLKQS IRLPPLATSG PVTATAAFVE TGKENHXQFW GEKKRGKRFA 120 DPVDDDESFR KRAKRKRGCG DNGGDGEGGG GLSLGQLGGG NFWFQPGFHL PPTTTQPPFS 180 LTCSGDEERV CYVPAEEISQ PLPLSNNPWL DSIVTEITDL GKKDGGGEAS RGLVGEGSAG 240 SSTSSESQSL ALRVNVSASE HDTGNGTRNP FVPHGGAGVV AEEEEDDESE AEHLGFELVS 300 LLTACVEAIG LKNIAAINHF IAKLGELASP KGSAISRXSA YYTEALSLRV TRLWPHVFQI 360 NAPRKFDRRD EDSGIELRLL NQVSPIPKFV HFTSNEILLR AFEGKDRVHI IDFDIKQGLQ 420 WPSLFQSLVS RTNPPSHVRI TGIGESKQEL NETGDRLAGF AGALNLPFEF HPVVDRLEDV 480 RLWMLHVKEH ESVAVNCVFQ LHKTLYDTTG GALRDFLGLI RSTNPTLVLM AEQEAEHNES 540 KLETRVSNSL KYYSAIFDSI GSSLPLESQA RIKVEEMFAQ EIRNIIACEG SDRLERHESF 600 EKWRKLMEQE GFRCVGITER EMLQSQFLLK MYASENYTVK KQEKNGAAEA LTLSWMDQPL 660 YTVSAWTPVD AAAGSSSSFS QPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-73 | 305 | 668 | 26 | 380 | Protein SCARECROW |
5b3h_A | 5e-73 | 305 | 668 | 25 | 379 | Protein SCARECROW |
5b3h_D | 5e-73 | 305 | 668 | 25 | 379 | Protein SCARECROW |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.16161 | 0.0 | bud| fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008369471.2 | 0.0 | scarecrow-like protein 28 | ||||
Swissprot | Q9CAN3 | 0.0 | SCL28_ARATH; Scarecrow-like protein 28 | ||||
TrEMBL | A0A498K6Q1 | 0.0 | A0A498K6Q1_MALDO; Uncharacterized protein | ||||
STRING | XP_008369471.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9161 | 32 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000945004 |