PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000943529
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 852aa    MW: 92877.6 Da    PI: 6.4105
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000943529genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-182482357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  MDP0000943529 24 KYVRYTPEQVEALERVYSECPKPSSLKRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82
                   6789*****************************************************97 PP
2START169.62e-531733792203
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  e+l  i  g  g+++l +
  MDP0000943529 173 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRKSWFRDCRCLEVLSLIPAGngGTIELVY 267
                    68999*****************************************************.7788888877****************9999******* PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s +  p+   s+s+vRae+lpSg+li+p+++g+s + +v+hvdl++++++++lrsl++s
  MDP0000943529 268 MQTYAPTTLAAaRDFWTLRYTTSLEDGSLVVCERSLTSSTGGPTgptSASFVRAEMLPSGYLIRPCEGGGSIINIVDHVDLDAWSVPEVLRSLYES 363
                    *****************************************999999************************************************* PP

                    HHHHHHHHHHHHTXXX CS
          START 188 glaegaktwvatlqrq 203
                    + + ++kt+ ++l++ 
  MDP0000943529 364 SKILAQKTTISALRHI 379
                    ***********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-19882IPR009057Homeodomain-like
PROSITE profilePS5007115.6451983IPR001356Homeobox domain
SMARTSM003896.6E-152187IPR001356Homeobox domain
SuperFamilySSF466891.71E-162485IPR009057Homeodomain-like
CDDcd000865.11E-162484No hitNo description
PfamPF000464.4E-162482IPR001356Homeobox domain
CDDcd146864.94E-676115No hitNo description
PROSITE profilePS5084826.76163364IPR002913START domain
CDDcd088751.10E-69167382No hitNo description
Gene3DG3DSA:3.30.530.208.9E-23171377IPR023393START-like domain
SMARTSM002347.5E-49172382IPR002913START domain
PfamPF018525.6E-51173380IPR002913START domain
SuperFamilySSF559611.26E-36173384No hitNo description
PfamPF086701.8E-49706850IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MALLMHRDSP GSSSGGRQQM DSSKYVRYTP EQVEALERVY SECPKPSSLK RQQLIRECPI  60
LSNIEPKQIK VWFQNRRCRE KQRKESSRLQ TVNRKLSAMN KLLMEENDRL QKQVSHLVYE  120
NGFMKQQLHT ASGTTTDNSC ESVVMSGQHQ QQQNPTPQHP KREANNPAGL LAIAEETLAE  180
FLSKATGTAV DWVQMIGMKP GPDSIGIVAV SRNCSGVAAR ACGLVSLEPT KVAEILKDRK  240
SWFRDCRCLE VLSLIPAGNG GTIELVYMQT YAPTTLAAAR DFWTLRYTTS LEDGSLVVCE  300
RSLTSSTGGP TGPTSASFVR AEMLPSGYLI RPCEGGGSII NIVDHVDLDA WSVPEVLRSL  360
YESSKILAQK TTISALRHIR QISQESSGEI QHGGGRQPAV LRTFCQRLCS GFNDAVNGFA  420
DDGWTLMGSD GVEDVTIAIN SSPNKVLGSQ YNTSIFSPFG GGVLCAKASM LLQSVPPALL  480
VRFLREHRSE WADYGVDAYS AACLKASPYA VPLARGGGFP TTQNILPLAQ TVEHEEFLEV  540
VRLEGPAFSP EDVALAQDMY LLQLCSGVDE NAVGACAQLV FAPIDESFAD DAPLLPSGFH  600
VIPLDPKDGP TASRTLDLAS TLEIGTSGAR AVNDPDGNGY NLRSVLTIAF QFTFENHLRD  660
NVAAMARQYV RSVVSSVQRV AMAIAPSRLS SQVGPKTLPG SPEAHTLARW IFRSYRIHTG  720
GELFRVDISS GDAVLKQLWR HSDAIMCCSV KTNASPVFTF ANQAGLDMLE TTLVALQDIT  780
LDKILDEAGR KLLCSEFSKI MQQGFAYLPA GICASSMGRP VSYEQAVAWK VVNDDDSNHC  840
LALMFVNWSF V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.19290.0bud| fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1774240.0FJ177424.1 Malus x domestica putative PHV HD-ZIPIII mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372224.10.0homeobox-leucine zipper protein HOX32-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A498JSU20.0A0A498JSU2_MALDO; Uncharacterized protein
STRINGXP_008372224.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]