PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000943252

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 178aa MW: 19402.9 Da PI: 7.8935

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000943252	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.4	3.6e-41	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l+++pe++red+++sl+yeAear+rdPvyG++g i+ lq+++ ql+++la+ MDP0000943252 12 SCAACKTLKRRCSPTCIFAPYFHSDDPKKFAQVHKVFGASNVSKILTEVPEDQREDTVNSLAYEAEARLRDPVYGCIGAISMLQRKMIQLQHDLAV 107 6**********************************************************************************************9 PP DUF260 97 lkee 100 ++++ MDP0000943252 108 ARAR 111 9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.501	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-40	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MKGSHEPRSS SSCAACKTLK RRCSPTCIFA PYFHSDDPKK FAQVHKVFGA SNVSKILTEV 60 PEDQREDTVN SLAYEAEARL RDPVYGCIGA ISMLQRKMIQ LQHDLAVARA RLACYAPKNS 120 PSLSSCSSSC CAMLDEATFT GFPAWSGLNS NNFCQNSSDL ISQHGQASDF SYPSYIL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-46	7	116	6	115	LOB family transfactor Ramosa2.1
5ly0_B	3e-46	7	116	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008369278.1	1e-130	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	1e-62	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A498JIK5	1e-129	A0A498JIK5_MALDO; Uncharacterized protein
STRING	XP_008369278.1	1e-130	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	6e-64	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	MDP0000943252

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]