PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000936873 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NF-YB | ||||||||
Protein Properties | Length: 187aa MW: 20947.3 Da PI: 7.1964 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 177.4 | 1.3e-55 | 44 | 139 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++walatlGf+dy+eplk yl++yrelegek MDP0000936873 44 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHRYRELEGEK 139 89********************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.8E-54 | 39 | 154 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.68E-41 | 46 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.4E-28 | 49 | 113 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.3E-19 | 77 | 95 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 80 | 96 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.3E-19 | 96 | 114 | No hit | No description |
PRINTS | PR00615 | 1.3E-19 | 115 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MVDNIGNNNS SADREGFKYN FTGGSSNVSS DYHHHLHNQE GVIKEQDRLL PIANVGRIMK 60 QILPPNAKIS KEAKETMQEC VSEFISFVTG EASDKCHKEK RKTVNGDDIC WALATLGFDD 120 YAEPLKRYLH RYRELEGEKA AHQGKANSNE EKAEVSPPRT RFPTAAADMS NPPYMERGNS 180 SLSRRF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 6e-45 | 43 | 134 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 6e-45 | 43 | 134 | 1 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008368975.1 | 1e-140 | nuclear transcription factor Y subunit B-5 | ||||
Swissprot | O82248 | 2e-64 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A498K5M2 | 1e-138 | A0A498K5M2_MALDO; Uncharacterized protein | ||||
STRING | XP_008368975.1 | 1e-139 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF805 | 32 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 8e-67 | nuclear factor Y, subunit B5 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000936873 |
Publications ? help Back to Top | |||
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