PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000935652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 612aa MW: 65626.7 Da PI: 6.9543 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.4e-30 | 353 | 411 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ MDP0000935652 353 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 411 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-33 | 337 | 413 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 345 | 413 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.677 | 347 | 413 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 352 | 412 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-26 | 354 | 411 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 612 aa Download sequence Send to blast |
MDKGWGLTLD SDSCGFLLNK PPTAAVKLDH NHNNNKRSSF FSGERMFSGM EFPVKLGSRE 60 EQTASQPSND NDRMVVDEVD FFSDRKNKLK SNSTDDHHQD SRSNDAMSVK KENWTGLDVN 120 TGLHLVTANT GSDQSMVDDG TSSDRADDKR AKNHELAQLQ VELQRMNAEN QRLKEMLGQV 180 TNNYSALQMH LAAVVQQQHN HTTAAPADQS SQLHHDQNAE AKADQGKKQG LVPRQFLNLG 240 PRATAEATDD QVSNSSSEAR TGSASPPQNI SEVASPKNGQ IGPLDPENSN TFRDGKRVGR 300 DESPESESEG WVPDKVPKLN NSAAPKPIDQ STEATMRKAR VSVRARSEAS MITDGCQWRK 360 YGQKMAKGNP CPRAYYRCTM AVGCPVRKQV QRCAEDRTIL ITTYEGNHNH PLPPAAMAMA 420 STTTAAASML LSGSMSSADG MNMNPNNLLA RAILPCSSSV ATISASAPFP TVTLDLTTSP 480 SHVQRPNTPF QVPNFPGXPP SFGAASHXLP QVFGQALYNQ SKFSGLQLSQ DTMGSTSSQX 540 QMQQTQSSSF ADTVSAITAD PSFTAALAAA ITSIIGGGAH PSNTTTNSAS PMSNNSSGAN 600 NNNKISGFPG N* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-22 | 339 | 415 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.11201 | 0.0 | bud| cell culture| fruit| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX112905 | 0.0 | JX112905.1 Malus hupehensis WRKY transcription factor 42 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028943455.1 | 0.0 | LOW QUALITY PROTEIN: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-165 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A498IWR5 | 0.0 | A0A498IWR5_MALDO; Uncharacterized protein | ||||
STRING | XP_008364089.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-142 | WRKY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000935652 |