PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000927314
Common NameMdTCP2A
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 487aa    MW: 53107.5 Da    PI: 8.803
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000927314genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.31.7e-35712322133
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssa.sec 73 
                     g+kdrhsk+ T++g+RdRRvRls+++ ++f+dLqd+LG+d++sk+++WL+++a  ai el+++                       +++sa    
  MDP0000927314  71 SGGKDRHSKVWTSKGLRDRRVRLSVTTGIQFYDLQDRLGYDQPSKAVDWLIKAAADAIAELPSLnnssfpdtpkqlsdekrascergGFDSAeI-E 165
                    689*************************************************************888888888888777777776664444421.2 PP

            TCP  74 ...eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrik 133
                       + ++++s+ +n+s++ + +++a+s+ s++s+ s l+l++      r+kar+rarer ++++ ++
  MDP0000927314 166 fdqNYHQNQSQPGNQSQHLSLSKSACSSTSETSKGSGLSLSRseirVNRSKARERARERAAKDKEKE 232
                    3335566666666777777777777888888888888888875333555999999999877766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-4272231IPR005333Transcription factor, TCP
PROSITE profilePS5136930.04473131IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.115211231IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MXXEEIQASN KFPRIGNGSS RDHKPSPEDE DNQNPSCLDL KRAAAATATA DAGNRLRGWH  60
HSRIIRVSRA SGGKDRHSKV WTSKGLRDRR VRLSVTTGIQ FYDLQDRLGY DQPSKAVDWL  120
IKAAADAIAE LPSLNNSSFP DTPKQLSDEK RASCERGGFD SAEIEFDQNY HQNQSQPGNQ  180
SQHLSLSKSA CSSTSETSKG SGLSLSRSEI RVNRSKARER ARERAAKDKE KESIESSYQQ  240
SINNNISQQN ASFTELLTAG IGTTHNNNSP TASAQHHQQN HGGGGEPILF HKAAAPMDYF  300
SPGLLGLSSS ARTHHSSGFS EQIHLGMNSI PQTMSVVSPF NVSGEHHHGH HSSELQHFSF  360
VPDLIPVTTS SQPGSGVDYN LNFSISSSGG LAGFNRGTLQ SNSSSSPSLM PHHLQRFSPI  420
DGTSNVPFFI GAAAAAASPT MENHHHHHHQ QHQQHQQQFP GGFDRRLQQL YGDGTRHSDH  480
KGKAKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2378132155Putative transcription factor PCF6
5zkt_B7e-2378132155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.303410.0bud| fruit| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5310190.0AB531019.1 Malus x domestica MdTCP2A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315816.10.0transcription factor TCP2-like
RefseqXP_008371621.20.0transcription factor TCP2-like isoform X1
RefseqXP_008371623.20.0transcription factor TCP2-like isoform X1
RefseqXP_008371624.20.0transcription factor TCP2-like isoform X1
TrEMBLD5MRQ00.0D5MRQ0_MALDO; MdTCP2A protein
STRINGXP_008364193.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2