PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000921788
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 691aa    MW: 77581 Da    PI: 8.6565
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000921788genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.72e-1271174862374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    +++L++cA+a+s+++l +a  l++ l +++s +g+pmqRl ay++e+L+arl rs+s++yk+l+++  +   ss+ +++++++++++P+ +f+++ 
  MDP0000921788 117 KDVLIDCARAISENELDNAICLMEVLGQMVSVSGEPMQRLGAYMLEGLRARLERSGSSIYKTLKCEVPT---SSQLMSYMSVLYKICPYWRFAYMS 209
                    789*****************************************************************9...999999****************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN  I ea+e+e r+HiiDf+i qG QW++L+q La +p+gpp++RiTgv++ +s+  +   l+ +g+rL+++A++++vpfefn+ +a   +++el
  MDP0000921788 210 ANVVIREALENEPRIHIIDFQIAQGSQWIPLIQDLARQPGGPPRIRITGVDDTQSEhaRGGGLHIVGNRLSELAASCNVPFEFNA-AAMCGSEVEL 304
                    ****************************************************9988889999***********************.899******* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    ++Lr+ pgEa+aVn+ + lh+++desvs+e++rd++L+lvkslsPkv+++veqe+++n+++F+ rf+e + yy+a+f+s+++  pr++++ri+   
  MDP0000921788 305 HNLRILPGEAIAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVMTLVEQESNTNTSPFFSRFVEMVXYYTAMFESIDVACPRDDKQRISAXM 400
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++++r+ivn+vacegaer+erhe ++kWr+rl++ GF+p+pls k+++ ++ ll++++++ +rv+e +g+l+l W++r++ + SaWr
  MDP0000921788 401 HCVARDIVNMVACEGAERVERHEPFGKWRSRLTMDGFTPYPLSPKVTEAIRVLLKEYHGN-FRVQEANGALYLSWMQRAMATSSAWR 486
                    **********************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.04490467IPR005202Transcription factor GRAS
PfamPF035147.0E-125117486IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MTRSSSLPWN HLHPLTFYLR FPSAISGLSN RSPFSPQGSH SCFSDQHHSS GNNYGSPISG  60
CSIIVDDDFK YKLREMEVSL LGPDSDIVDS HFCSHRSGMA RWSQSQIAET IPKLNLKDVL  120
IDCARAISEN ELDNAICLME VLGQMVSVSG EPMQRLGAYM LEGLRARLER SGSSIYKTLK  180
CEVPTSSQLM SYMSVLYKIC PYWRFAYMSA NVVIREALEN EPRIHIIDFQ IAQGSQWIPL  240
IQDLARQPGG PPRIRITGVD DTQSEHARGG GLHIVGNRLS ELAASCNVPF EFNAAAMCGS  300
EVELHNLRIL PGEAIAVNFP YVLHHMPDES VSTENHRDRL LRLVKSLSPK VMTLVEQESN  360
TNTSPFFSRF VEMVXYYTAM FESIDVACPR DDKQRISAXM HCVARDIVNM VACEGAERVE  420
RHEPFGKWRS RLTMDGFTPY PLSPKVTEAI RVLLKEYHGN FRVQEANGAL YLSWMQRAMA  480
TSSAWRTRAA TTSRKGRLRV ENAKAGDFQS QQISNEHEAG ASGGNSDVWE VTQLEKTTAE  540
RLEAVASKSA NFPKWLRLSH IRRLARSLNN LGGEVIGNHQ IVAQVAPKGG ASNASCFRIG  600
DFKSGRLPNG LRFSCVKRLA RQLEDRGLRT AMSLQQKFRP YSVLVVLRTS VPPGFNDLSQ  660
KFQHRKIDFW RILMWFSQYK EGMQLLGDIC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-511204868375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.109770.0bud| cell culture| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}.
UniprotTISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3976380.0JQ397638.1 Malus zumi SCL mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008370992.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A498JX080.0A0A498JX08_MALDO; Uncharacterized protein
STRINGXP_008370992.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13