PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000920870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | G2-like | ||||||||
Protein Properties | Length: 289aa MW: 32710.7 Da PI: 7.3242 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.3 | 3.5e-33 | 28 | 82 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl MDP0000920870 28 KPRLRWTPDLHHRFVDAVTKLGGPHKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 82 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.594 | 25 | 85 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-32 | 25 | 83 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-15 | 28 | 84 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.4E-24 | 28 | 83 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-9 | 30 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.3E-21 | 132 | 176 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MERNIYGNCE GEGNCGYENG VMMTRDPKPR LRWTPDLHHR FVDAVTKLGG PHKATPKSVL 60 RLMGLKGLTL YHLKSHLQKY RLGQHAQKHN SVEEQSRENN GDPYVHFSNH LSTGSSMKSS 120 RGGNTEQGTL PLSEELKCQI EVQNRLQEQL EVQKKLQMRI EAQGKYLQAI LEKAQNGLTL 180 DVKVPDNIEA TRAQLTDFNL ALSNFMENMG EQDRGGNTIE MNDIYKKHNG STFQIYEEGI 240 REENKDTKLK VEGASIRFDL NSKGSYDYVG SNGGEFETRC FRLQDTTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-19 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-19 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-19 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-19 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028953847.1 | 0.0 | myb family transcription factor PHL11-like | ||||
Swissprot | C0SVS4 | 1e-79 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A498HNU9 | 0.0 | A0A498HNU9_MALDO; Uncharacterized protein | ||||
STRING | XP_009347087.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5101 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 9e-70 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000920870 |
Publications ? help Back to Top | |||
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