PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000920127 | ||||||||
Common Name | MdTCP2A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TCP | ||||||||
Protein Properties | Length: 487aa MW: 53178.8 Da PI: 9.0704 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.1 | 1.3e-33 | 71 | 232 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssa.sec 73 g+kdrhsk+ T++g+RdRRvRls+++ ++f+d qd+LG+d++sk++ WL+++a ai el+++ +++sa MDP0000920127 71 SGGKDRHSKVWTSKGLRDRRVRLSVTTXIQFYDXQDRLGYDQPSKAVXWLIKAAADAIAELPSLnnssfpdtpkqlsdekrascergGFDSAeI-E 165 689*************************************************************888888888888777777776664444421.2 PP TCP 74 ...eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrik 133 + ++++s+ +n+s++ + +++a+s+ s++s+ s l+l++ r+kar+rarer ++++ ++ MDP0000920127 166 fdqNYHQNQSQPGNQSQHLSLSKSACSSTSETSKGSGLSLSRseirVNRSKARERARERAAKDKEKE 232 3335566666666777777777777888888888888888875333555999999999877766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.3E-40 | 72 | 231 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 73 | 131 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.115 | 211 | 231 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MXXEEIQASN KFPRIGNGSS RDHKPSPEDE DNQNPSCLDL KRAAAATATA DAGNRLRGWH 60 HSRIIRVSRA SGGKDRHSKV WTSKGLRDRR VRLSVTTXIQ FYDXQDRLGY DQPSKAVXWL 120 IKAAADAIAE LPSLNNSSFP DTPKQLSDEK RASCERGGFD SAEIEFDQNY HQNQSQPGNQ 180 SQHLSLSKSA CSSTSETSKG SGLSLSRSEI RVNRSKARER ARERAAKDKE KESIESSYQQ 240 SINNNISQQN ASFTELLTAG IGTTHNNNSP TASAQHHQQN HGGGGEPILF HKAAAPMDYF 300 SPGLLGLSSS ARTHHSSGFS EQIHLGMNSI PQTMSVVSPF NVSGEHHHGH HSSELQHFSF 360 VPDLIPVTTS SQPGSGVDYN LNFSISSSGG LAGFNRGTLQ SNSSSSPSLM PHHLQRFSPI 420 DGTSNVPFFI GAAAAAASPT MENHHHHHHQ QHQQHQQQFP GGFDRRLQQL YGDGTRHSDH 480 KGKAKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-21 | 78 | 132 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-21 | 78 | 132 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30341 | 0.0 | bud| fruit| leaf| root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB531019 | 0.0 | AB531019.1 Malus x domestica MdTCP2A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315816.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_008371621.2 | 0.0 | transcription factor TCP2-like isoform X1 | ||||
Refseq | XP_008371623.2 | 0.0 | transcription factor TCP2-like isoform X1 | ||||
Refseq | XP_008371624.2 | 0.0 | transcription factor TCP2-like isoform X1 | ||||
TrEMBL | D5MRQ0 | 0.0 | D5MRQ0_MALDO; MdTCP2A protein | ||||
STRING | XP_008364193.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008371621.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4019 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 3e-42 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000920127 |