PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000919694
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SBP
Protein Properties Length: 984aa    MW: 109301 Da    PI: 6.5689
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000919694genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.5e-41148225178
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    +Cqve+C+adls+ak+yhrrhkvC +hska+++lv  ++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++
  MDP0000919694 148 VCQVEDCKADLSNAKDYHRRHKVCAMHSKATKALVGSVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNRRRRKTHP 225
                    6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-32143210IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.932146223IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.16E-37147228IPR004333Transcription factor, SBP-box
PfamPF031103.1E-29149222IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.2E-7755867IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.1E-6757863IPR020683Ankyrin repeat-containing domain
CDDcd002048.33E-8758865No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 984 aa     Download sequence    Send to blast
MESEFGGKAC NFRGVMVPNL KGVGKKSLEW DLNDFKWDGD LFTASPLNST PSDGRSRQLF  60
PARPETPSDA GLSNSSSSGS DNISPGNEKD QRELEKRRRD FFVENRELND EAASLNLKLG  120
GQTYPIMEEE VQTGKKTKTI GTTSNRAVCQ VEDCKADLSN AKDYHRRHKV CAMHSKATKA  180
LVGSVMQRFC QQCSRFHALQ EFDEGKRSCR RRLAGHNRRR RKTHPDTAVN GGSLNNEGGS  240
GYLLISLLRI LSNMHSSSSD QTKDQDVISH LLRSLANVAG TADGRNISTL LQGSQGLFNS  300
GTSVQTARRV LDMNAGVNTE DPLRSKGHCS ILPASRDSSE SKSVTPEATS RRFQLNDIDL  360
NSTYDDSQDY VENLGNSHVP ASPGTASLGF PSWMQRDSHK SSPPQTSGNS DLTSTQSPSS  420
SSGEAQSHTD RIIFKLFGKD PNELPLALRS QILDWLSHSP TNIESYIRPG CIILTIYLRL  480
EKSTWEEFCC HLGSSLKTLL DAADDPFWRT GWVYTRVQDY VAFTYNGEVV LDTPLPLKSN  540
KSCRISCIKP IAISLSERAE FIVKGFNLSS STTRLLCALE GKYLAQETCY DLLDDADSTV  600
EDDEQQCLKF SCSIPNVTGR GFIEVEDHGL SSSFFPFIVA EQEVCSEICM LEDVIEVSET  660
DDDIQSGPEK VEAKNQALDF IHELGWLLHR SRVKFRLGQL DPNLDTFPFR RFRLLMEFSI  720
DHDWCAVVKK LLGILFDGTV DAAEHPSLES ALLDMGLLHR AVRINSRRMV EFLLRFVPGL  780
TGSEQKEQVD RDGNSFLFKP DVVGPMGLTP LHIAASTDGC EQVLDALTDD PGKVGIKAWK  840
NTRDSTGLTP YDYACLRSRY SYVHIVQRKI SNTLESGHVV LDIPGLTLDR NGKQKQSDAH  900
KSSRVASLET ERNDIKAILR HCRLCEQKPA YSTTRSLVYR PAMLSLVAVA AVCVCVALLF  960
KSNPEVVFVL EPFRWEHLKF GSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-291482221084squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.88670.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353416.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A498HJS40.0A0A498HJS4_MALDO; Uncharacterized protein
STRINGXP_008390370.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]