PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000916623 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TCP | ||||||||
Protein Properties | Length: 355aa MW: 38809.8 Da PI: 6.4586 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.9 | 4.6e-35 | 22 | 138 | 2 | 110 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................ssssas 71 +g+kdrhski+T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++ + MDP0000916623 22 TGRKDRHSKIYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLVELppwhpittsnhaaeaddpfrssnpnpN----- 112 79**************************************************************888877654444444444433222220..... PP TCP 72 eceaesssssasnsssg..kaaksaakskksqksaasalnl 110 + + + aa +++s++s++ + n+ MDP0000916623 113 ---------------GPnpNDMVIAAAEQQSESSTSYNFNF 138 ...............11222222222222222222211111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.6E-31 | 22 | 132 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.599 | 24 | 82 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGMEGCGGEI VEVQGGHIVR STGRKDRHSK IYTAKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKSSID KLVELPPWHP ITTSNHAAEA DDPFRSSNPN PNGPNPNDMV 120 IAAAEQQSES STSYNFNFEL QRQRQSDNDS NFNIXPXLDS DNIADTMKSF FPTNTSSNAA 180 AASSVDDFRS YPTDPHLISA TTQDLGLSLH SFQDQGLNIH HNHTHTQQSS QALFAAAVGT 240 GFDSSSYQRM VAWSNENRGL DGGFVFNSHS HSYXQPXPHN HGGDGNHGST LQSSFTPSVS 300 TRAWQQQHSS IFGTRFGTSD GTSPVFCXQG EEAENGTISD RPSSTSSLNS TRQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-22 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-22 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.14482 | 0.0 | bud| fruit| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM501064 | 0.0 | KM501064.1 Malus domestica TCP domain-containing protein 4 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008342868.2 | 0.0 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 4e-61 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A498HHB9 | 0.0 | A0A498HHB9_MALDO; Uncharacterized protein | ||||
STRING | XP_008342868.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-61 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000916623 |