PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000916524
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 212aa    MW: 22555.9 Da    PI: 4.3922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000916524genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00084184207123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    + C+ C++sF++   L++H +  H
  MDP0000916524 184 FHCQPCNRSFNSDGALQSHAKAkH 207
                    67999**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.58E-5178206No hitNo description
Gene3DG3DSA:3.30.160.601.4E-4184207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.863184211IPR007087Zinc finger, C2H2
PfamPF128744.6E-5184204No hitNo description
PROSITE patternPS000280186207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGASTSLDTS LWDILFVNVI SCLNDSEEED APPIRAPTXV DKGKAKVNGT EVAKKPSISE  60
QKEASSDDDD ESDDEEFGAQ PLAEGDSSED FDESDDDSDS DDETDDSDED EETPKKADVG  120
KKRPAESTKT PANDKKPKFV TPEKTGSKKG SVHTATPHPS KQTGKKPATS DQSKQQAPKP  180
SGAFHCQPCN RSFNSDGALQ SHAKAKHSAA K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386929.21e-125histone deacetylase HDT1
TrEMBLA0A498IHG17e-90A0A498IHG1_MALDO; Uncharacterized protein
STRINGXP_008386929.11e-124(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-19histone deacetylase 2C