PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000915616 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TCP | ||||||||
Protein Properties | Length: 315aa MW: 33467.9 Da PI: 9.1085 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.7 | 1e-38 | 63 | 147 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i ++tgt++++as+ a+ s+s+++ s MDP0000915616 63 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIMAATGTGTIPASALaAAGGSVSQQG-TS 147 789******************************************************************99854444444433.22 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.9E-31 | 68 | 187 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.567 | 69 | 123 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MDPKGSKQTQ DIPSFLSLPP QPQQQQQPPP QPNNNMNDDK PAEIKDFQIV IADKDESGKK 60 QLAPKRSSNK DRHTKVEGRG RRIRMPALCA ARIFQLTREL GHKSDGETIQ WLLQQAEPSI 120 MAATGTGTIP ASALAAAGGS VSQQGTSLSA GLHQKIDELG GSSGGRTSWA MVGGNLGRPH 180 VAGVGGLWPP VSSFGFQSSS GPPSATTNLG SESSNYLQKI GXPGFDLPVS NMGPMSFTSI 240 LGGGNQQQQQ LPGLELGLSQ DGHIGVLNSQ ALSQIYQQMG HARVHQQPPQ HHQQQHHHHH 300 QQPPSKDDSQ GSGQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11331 | 0.0 | bud| fruit| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008362098.2 | 1e-163 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 8e-79 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A498HL47 | 1e-162 | A0A498HL47_MALDO; Uncharacterized protein | ||||
STRING | XP_008362098.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 9e-61 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000915616 |