PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000915100
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 685aa    MW: 75479.1 Da    PI: 5.5707
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000915100genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.44.7e-1303006691374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv+lL++c+ea+  ++ +++++++++l elasp+g++++Rl ay+teAL+ r++r +++++++ +p+e +++++ +   a++l+++ sPi+kf h+
  MDP0000915100 300 LVSLLTACVEAIGLKNIAAINHFITKLGELASPKGSAIRRLSAYYTEALSLRVTRLWPHVFQINAPREFDRRDE-DYGIAVRLLNQFSPIPKFVHF 394
                    6899*****************************************************************96555.5556779************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+La R+++p ++RiTg+g+    sk+el+et++rLa fA +l++pfef++ v++rled++++
  MDP0000915100 395 TSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLALRTNPPSHVRITGIGE----SKQELNETRDRLAGFAGALNLPFEFHP-VVDRLEDVRVW 485
                    *****************************************************....***************************.7********** PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                    +L+vk++E++aVn+v+qlh++l + +    + +++L l++s++P++v ++eqea+hn++++ +r++++l+yysa+fds+ ++lp  s++rikvE++
  MDP0000915100 486 MLHVKEHESVAVNCVFQLHKTLYDMTGG--ALRDFLGLIRSTNPTIVLMAEQEAEHNEARLETRVSNSLKYYSAIFDSIGSSLPLGSQARIKVEEM 579
                    *********************9554443..4589************************************************************** PP

           GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaWr 374
                     ++rei+n+vaceg++r erhe++ekWr+++e+ GF+ + ++e+++ q + ll++++++ y v+++      g+l+l W+drpL++vSaW+
  MDP0000915100 580 -FAREIRNIVACEGSDRLERHESFEKWRKWMEQGGFRCAGITEREMLQSQFLLKMYANESYAVKKQeqdgaAGALTLSWMDRPLYTVSAWT 669
                    .********************************************************999****776777789999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.07274644IPR005202Transcription factor GRAS
PfamPF035141.6E-127300669IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE AAAQLQACSF QLPSMSTQRL DLPCSFPRKD TSRSQPIRPV  60
GLSVEKSIDS KVGSCSLKQS IRLPPLATTG PVSATAEFVE AGKENRDQFS GEKKRGKRFA  120
EPVDDDESCR NRAKRKRGCG DNGGGDEGGG GLSLGQLGXX NFXFQPGFQL PPPTTQLPFS  180
LTCSGDDERV CYVPGEAISQ PLPLSNSPWL DSIVTEITDL GKKDGGGEAS RGLVWEESAA  240
SSTSSESQSL ALSVNESASE HEAGNGTRNP YVPHGGAWVV AEEDDDDDDE SEAEHIGFEL  300
VSLLTACVEA IGLKNIAAIN HFITKLGELA SPKGSAIRRL SAYYTEALSL RVTRLWPHVF  360
QINAPREFDR RDEDYGIAVR LLNQFSPIPK FVHFTSNEIL LRAFEGKDRV HIIDFDIKQG  420
LQWPSLFQSL ALRTNPPSHV RITGIGESKQ ELNETRDRLA GFAGALNLPF EFHPVVDRLE  480
DVRVWMLHVK EHESVAVNCV FQLHKTLYDM TGGALRDFLG LIRSTNPTIV LMAEQEAEHN  540
EARLETRVSN SLKYYSAIFD SIGSSLPLGS QARIKVEEMF AREIRNIVAC EGSDRLERHE  600
SFEKWRKWME QGGFRCAGIT EREMLQSQFL LKMYANESYA VKKQEQDGAA GALTLSWMDR  660
PLYTVSAWTT VDVAGSSSSF SKPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6830766926379Protein SCARECROW
5b3h_A2e-6830766925378Protein SCARECROW
5b3h_D2e-6830766925378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.161610.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346588.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A498JK930.0A0A498JK93_MALDO; Uncharacterized protein
STRINGXP_008373836.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein