PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000913089
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 164aa    MW: 18558.4 Da    PI: 10.7039
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000913089genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-07828526
                   --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                   +C +f r G+Ck  ++C+F Hg
  MDP0000913089  8 PCLYFTR-GYCKNVASCRFLHG 28
                   8999999.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.61E-5328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5529IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033529IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5828IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MVERKWKPCL YFTRGYCKNV ASCRFLHGDG LGDAVIDGGG XVVVGSPSKL EMMDHESLLR  60
SKTAQQHRLA ATSQLMEASA NYFPYSSKCM NFLLQQQHFL SPLSAACGLG SLISTIFLDT  120
RGIEPELCFT RILRFRETRV MRRQRKMRRV ATRRQKTRMA ITA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147RRQRKMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017192260.25e-50zinc finger CCCH domain-containing protein 53-like
SwissprotQ94CJ82e-14C3H55_ARATH; Zinc finger CCCH domain-containing protein 55
TrEMBLA0A498JVS32e-48A0A498JVS3_MALDO; Uncharacterized protein
STRINGXP_008349338.18e-41(Malus domestica)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]