PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000913089 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 164aa MW: 18558.4 Da PI: 10.7039 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.7 | 1.7e-07 | 8 | 28 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +f r G+Ck ++C+F Hg MDP0000913089 8 PCLYFTR-GYCKNVASCRFLHG 28 8999999.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.61E-5 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.821 | 3 | 30 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 5 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0033 | 5 | 29 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-5 | 8 | 28 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MVERKWKPCL YFTRGYCKNV ASCRFLHGDG LGDAVIDGGG XVVVGSPSKL EMMDHESLLR 60 SKTAQQHRLA ATSQLMEASA NYFPYSSKCM NFLLQQQHFL SPLSAACGLG SLISTIFLDT 120 RGIEPELCFT RILRFRETRV MRRQRKMRRV ATRRQKTRMA ITA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 147 | RRQRKMR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017192260.2 | 5e-50 | zinc finger CCCH domain-containing protein 53-like | ||||
Swissprot | Q94CJ8 | 2e-14 | C3H55_ARATH; Zinc finger CCCH domain-containing protein 55 | ||||
TrEMBL | A0A498JVS3 | 2e-48 | A0A498JVS3_MALDO; Uncharacterized protein | ||||
STRING | XP_008349338.1 | 8e-41 | (Malus domestica) |
Link Out ? help Back to Top | |
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Phytozome | MDP0000913089 |
Publications ? help Back to Top | |||
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