PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000911962 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 653aa MW: 71675.9 Da PI: 6.7792 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.9 | 3.1e-07 | 266 | 286 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +f++ GtC++Gd C +aHg MDP0000911962 266 PCLDFRK-GTCRRGDLCEYAHG 286 6999***.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 8.4E-19 | 8 | 158 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 6.84E-18 | 52 | 159 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.97E-17 | 53 | 157 | No hit | No description |
SMART | SM00248 | 0.0023 | 53 | 83 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 18.802 | 53 | 160 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.4E-10 | 53 | 122 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0012 | 88 | 120 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.888 | 88 | 123 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50103 | 12.652 | 261 | 288 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-4 | 261 | 287 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-4 | 266 | 288 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-5 | 266 | 286 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 294 | 324 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 77 | 296 | 319 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MCVEAEHSFS SLLELAADND VKGFKQSISD PAVVNEIGLW YGRHSASRRM VLEYRTPLMV 60 ASKYGSVDVV KLILSLSKAD VNFSLGPDKT TALHCAVSGG SEKAVETVKV LLQAGADPNA 120 TDANGCFPLD VIVAPLNCSN LKVVLQELLQ YGDSVHALSV SFGFSSPFLS TTPTNNSLPS 180 SIPDSTCNTY DIHGSSTPEK KEHPFDLSLP NIKDSIYATD KFRMFSFKIR PCSRAYSHDX 240 TECPXXHPGE NARRRDPRKF QYSCMPCLDF RKGTCRRGDL CEYAHGVFEC WLHPAQYKTR 300 LCKDGMSCLR QVCFFAHKPE EMRPLYVSTG SAMPSPHSAT SAAAFMDMAA TLNVLPGSTK 360 AVEAMSPPFT PPMSLHDGIF DSSMAWPQQY IPGLYLPGSN IQASRLRSSF NANNVPTEEV 420 NMLHNFEMXQ QQSFHDGSSF SHSYISASSM SHPRRQETLT PSNLNDVFAS HLSSPRFADQ 480 LANSSAFSSS KISIVRNQLH QQQSMLSPIR TNVFSPRLVD QNLLQVPFGL SSLRMMSPRS 540 MEPLSPIGTR VSTLAQQEKQ KPLYSPNSCD AGSNGVGSPM SMSKWESSSA KLDWSVQTDE 600 PGHLSKLSYT EHNVNEPDVS WIQSLVKESP SDAKEITSVP ESGTLLPIEC SN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017183230.2 | 0.0 | zinc finger CCCH domain-containing protein 56-like, partial | ||||
Swissprot | Q9LXV4 | 0.0 | C3H56_ARATH; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A498K4S3 | 0.0 | A0A498K4S3_MALDO; Uncharacterized protein | ||||
STRING | XP_008355305.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20445 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12850.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | MDP0000911962 |