PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000911962
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 653aa    MW: 71675.9 Da    PI: 6.7792
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000911962genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07266286526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C +f++ GtC++Gd C +aHg
  MDP0000911962 266 PCLDFRK-GTCRRGDLCEYAHG 286
                    6999***.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.208.4E-198158IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.84E-1852159IPR020683Ankyrin repeat-containing domain
CDDcd002042.97E-1753157No hitNo description
SMARTSM002480.00235383IPR002110Ankyrin repeat
PROSITE profilePS5029718.80253160IPR020683Ankyrin repeat-containing domain
PfamPF127963.4E-1053122IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001288120IPR002110Ankyrin repeat
PROSITE profilePS5008811.88888123IPR002110Ankyrin repeat
PROSITE profilePS5010312.652261288IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4261287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4266288IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-5266286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4294324IPR000571Zinc finger, CCCH-type
SMARTSM0035677296319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MCVEAEHSFS SLLELAADND VKGFKQSISD PAVVNEIGLW YGRHSASRRM VLEYRTPLMV  60
ASKYGSVDVV KLILSLSKAD VNFSLGPDKT TALHCAVSGG SEKAVETVKV LLQAGADPNA  120
TDANGCFPLD VIVAPLNCSN LKVVLQELLQ YGDSVHALSV SFGFSSPFLS TTPTNNSLPS  180
SIPDSTCNTY DIHGSSTPEK KEHPFDLSLP NIKDSIYATD KFRMFSFKIR PCSRAYSHDX  240
TECPXXHPGE NARRRDPRKF QYSCMPCLDF RKGTCRRGDL CEYAHGVFEC WLHPAQYKTR  300
LCKDGMSCLR QVCFFAHKPE EMRPLYVSTG SAMPSPHSAT SAAAFMDMAA TLNVLPGSTK  360
AVEAMSPPFT PPMSLHDGIF DSSMAWPQQY IPGLYLPGSN IQASRLRSSF NANNVPTEEV  420
NMLHNFEMXQ QQSFHDGSSF SHSYISASSM SHPRRQETLT PSNLNDVFAS HLSSPRFADQ  480
LANSSAFSSS KISIVRNQLH QQQSMLSPIR TNVFSPRLVD QNLLQVPFGL SSLRMMSPRS  540
MEPLSPIGTR VSTLAQQEKQ KPLYSPNSCD AGSNGVGSPM SMSKWESSSA KLDWSVQTDE  600
PGHLSKLSYT EHNVNEPDVS WIQSLVKESP SDAKEITSVP ESGTLLPIEC SN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017183230.20.0zinc finger CCCH domain-containing protein 56-like, partial
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A498K4S30.0A0A498K4S3_MALDO; Uncharacterized protein
STRINGXP_008355305.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2044534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain