PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000909160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 173aa MW: 20011 Da PI: 8.8391 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.9 | 1.5e-17 | 16 | 69 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t++q++ Le+ F++n+++ e++ LAk+l ++ rqV +W+qN+Ra++k MDP0000909160 16 SKKRLTQDQVKLLERSFASNNKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWK 69 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 108.2 | 5.8e-35 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k+rl+++qvklLE+sF +++kLeperK la++L + prqva+W+qn+RAR+kt+ lE dy+a+++++++ +e++rLek+ e+Lr elk+ MDP0000909160 16 SKKRLTQDQVKLLERSFASNNKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWKTQSLEFDYSAIQAKLESTLAEKRRLEKDIERLRGELKK 107 59*************************************************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.92 | 11 | 71 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-13 | 13 | 75 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-17 | 14 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.04E-12 | 14 | 72 | No hit | No description |
Pfam | PF00046 | 5.8E-15 | 15 | 69 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 18 | 78 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MDFFHSSNHK NQFKHSKKRL TQDQVKLLER SFASNNKLEP ERKLLLAKQL AIPPRQVAIW 60 YQNKRARWKT QSLEFDYSAI QAKLESTLAE KRRLEKDIER LRGELKKAHE IVLALNQQSQ 120 XFPDNPVICS VFDSSNCSDE GVGSSSLQPH EDDXVKQLEE LYACLIGMQX WV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008367179.2 | 1e-121 | homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A498K457 | 1e-119 | A0A498K457_MALDO; Uncharacterized protein | ||||
STRING | XP_008367179.1 | 1e-122 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53980.1 | 5e-38 | homeobox protein 52 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000909160 |