PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000907178
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 167aa    MW: 19086.5 Da    PI: 7.996
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000907178genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM782.1e-2471441128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk.........kvkaeekewyfFskrdkkyatgkrknra..tksgyWk 84 
                    +p+G+rF P+d+el+  yL++k++g++ +   +++++d+y + eP+d+ +         +  +++k++y F++ ++k+++g+r  r+  t+ g+Wk
  MDP0000907178   7 VPVGYRFMPRDDELLLGYLRPKLDGQDYPK-GIVHDCDLYGLeEPSDIWRrlnrashdgQECTDDKDIYVFTTLNSKAPNGSRVCRTvgTTGGTWK 101
                    599************************999.89*******9978****64356665554222377899******************645779**** PP

            NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ke++++  ++++glkk  ++   ++ ++++ +W+mhe++l
  MDP0000907178 102 GEDAGKEIYASgIKHAIGLKKRYTYR--NKGSSQNDHWIMHEFHL 144
                    **********855677******9998..45555799********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-283151IPR003441NAC domain
PROSITE profilePS5100527.597162IPR003441NAC domain
PfamPF023658.0E-178144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAGYYQVPVG YRFMPRDDEL LLGYLRPKLD GQDYPKGIVH DCDLYGLEEP SDIWRRLNRA  60
SHDGQECTDD KDIYVFTTLN SKAPNGSRVC RTVGTTGGTW KGEDAGKEIY ASGIKHAIGL  120
KKRYTYRNKG SSQNDHWIMH EFHLDPSLLR NKHHQVSTLF FLLNCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-14715117149NO APICAL MERISTEM PROTEIN
1ut4_B1e-14715117149NO APICAL MERISTEM PROTEIN
1ut7_A1e-14715117149NO APICAL MERISTEM PROTEIN
1ut7_B1e-14715117149NO APICAL MERISTEM PROTEIN
3swm_A1e-14715120152NAC domain-containing protein 19
3swm_B1e-14715120152NAC domain-containing protein 19
3swm_C1e-14715120152NAC domain-containing protein 19
3swm_D1e-14715120152NAC domain-containing protein 19
3swp_A1e-14715120152NAC domain-containing protein 19
3swp_B1e-14715120152NAC domain-containing protein 19
3swp_C1e-14715120152NAC domain-containing protein 19
3swp_D1e-14715120152NAC domain-containing protein 19
4dul_A1e-14715117149NAC domain-containing protein 19
4dul_B1e-14715117149NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008361191.21e-115NAC domain-containing protein 83-like
TrEMBLA0A498K5P41e-122A0A498K5P4_MALDO; Uncharacterized protein
STRINGXP_008368783.11e-109(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.17e-16Arabidopsis NAC domain containing protein 26