PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000902473
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 304aa    MW: 33795.7 Da    PI: 7.7809
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000902473genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.83.1e-402787262
         zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                   +++alkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s
  MDP0000902473 27 HDQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 87
                   7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-292585IPR003851Zinc finger, Dof-type
PfamPF027011.2E-332885IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0593185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDSSSPLSGD MLTCSRPLIE RRLRPQHDQA LKCPRCESTH TKFCYYNNYS LSQPRYFCKT  60
CRRYWTKGGT LRNIPVGGGC RKNKKVSSKK PNDQNPSSLM NQHYHAGSSS SSISHTPTDL  120
HLSFPDQMQY SHLNNLMLGS TMNPSSFMDN SNPRPIDFME SKLEAIVGNA RNYDFMGNGS  180
DLGMMGGFGN NMGGVSHGLD HQSSFHHHGM CSSPFGMSSL DGQTGNFMDS CQRLMLPYDQ  240
ANHEDHHQIN AMDVKPNTKL LSLEWQDQGC SDHGKESFGY LNGLGSWTNV MNNYGPSTTN  300
PLV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302480.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364608.10.0dof zinc finger protein DOF5.6-like
TrEMBLA0A498I6340.0A0A498I634_MALDO; Uncharacterized protein
STRINGXP_008364608.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50923456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.12e-46Dof family protein