PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000899816 | ||||||||
Common Name | HD16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 234aa MW: 26908 Da PI: 6.181 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 5e-20 | 34 | 86 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq+ Le+ Fe ++++ +++ +LA++lgL+ rqV +WFqNrRa++k MDP0000899816 34 TRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWK 86 468*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.8 | 1.4e-38 | 33 | 123 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 + rr+s+eq++lLE+ Fe+++kLep+rKv+lareLglqprqva+WFqnrRAR+k+kq+E+d ++L++ yd+l+++ e+L++e+++L +l+ MDP0000899816 33 NTRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWKSKQIEQDLRSLREDYDKLASRFESLKEEKQSLLMQLH 123 579***********************************************************************************98886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-20 | 22 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.993 | 28 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-19 | 31 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.94E-17 | 32 | 89 | No hit | No description |
Pfam | PF00046 | 2.6E-17 | 34 | 86 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 34 | 94 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.3E-6 | 59 | 68 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 63 | 86 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.3E-6 | 68 | 84 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.1E-9 | 88 | 123 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MERSKEECYE EENLDYGIEP QSAMKRKKNK SKNTRRFSDE QISLLESIFE ADSKLEPRRK 60 VQLARELGLQ PRQVAIWFQN RRARWKSKQI EQDLRSLRED YDKLASRFES LKEEKQSLLM 120 QLHLQKLHDL VGTSRDGAPP EDSLANQTAD GSSYKEGNCK TSARVRLEEA LEQRGAIDSH 180 TSHDVGGEFG DEIHDLLNIG QLDASLTPQG LHRLDSGNIL VDRCNSHWLN FWT* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 24 | 35 | KRKKNKSKNTRR |
2 | 80 | 88 | RRARWKSKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.7963 | 0.0 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001281285.1 | 1e-168 | homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | D9ZJ09 | 1e-167 | D9ZJ09_MALDO; HD domain class transcription factor | ||||
STRING | XP_008376788.1 | 1e-168 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-38 | homeobox 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000899816 |
Entrez Gene | 103439922 |