PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000891859

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 283aa MW: 30971.5 Da PI: 8.2179

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000891859	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H MDP0000891859 110 FSCNYCHRKFYSSQALGGHQNAH 132 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.86E-6	107	137	No hit	No description
PROSITE profile	PS50157	11.406	110	137	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	112	132	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MEPAKNYETN IFLVAEAPPC PNTPLQDPKE TKQKLRVEED EEEMKDQEKE KKPSIRIIDL 60 EASDSNSNRG FSFDNPELNL LECLETGSSE GTTTTTTTTL VSDAAEPRVF SCNYCHRKFY 120 SSQALGGHQN AHKRERTLAK RGQRMLGSHI MASAAGFGYP YYSSLASLPL HGGAFRALDI 180 XAHSTIHKPS SMMPSSAIRF GGSYGHRSFG SRSLFDQQPA VGKLAAAATR GVGGAGRFDM 240 AKSNMVSQSS EEIGKCWLGN DSRFKNSSDQ EKMKKLDLSL KL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008347496.2	0.0	zinc finger protein 1-like
TrEMBL	A0A498JC97	0.0	A0A498JC97_MALDO; Uncharacterized protein
STRING	XP_008347496.1	0.0	(Malus domestica)
STRING	XP_008357277.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	5e-40	zinc finger protein 3

Link Out ? help Back to Top
Phytozome	MDP0000891859