PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000881409

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 279aa MW: 29466.6 Da PI: 8.0525

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000881409	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	43.9	6.9e-14	28	81	47	100
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 k++p++ +++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e++l +++ MDP0000881409 28 KQTPPSSSPTIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQVAVEAVLKGQP 81 67899999***************************************9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	8.2E-9	28	76	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDANIRKGCS ENAASGLACS GLRARSPKQT PPSSSPTIFR SLLYEACGRI VNPIYGSVGL 60 LWSGSWQLCQ VAVEAVLKGQ PITPITSEAA ANGHGPPLKA YDIRHVSKDE NSAASNDPQK 120 VKTRYRFKRS AVKAKTNKVG SGSXSGCGSG ADESAKPSWT GCSADKFNRS MSHESSLSHQ 180 SEAAANVDGD SKESESMISS ETAEAELFFR AEPESARKRT ESVQDGELAL ELTLGLQPQS 240 RANHVVPVKK RRIEAGFGAV SPADDGACKM ELGLDYVA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.5182	1e-162	bud\| cell culture\| fruit\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008342076.2	1e-167	LOB domain-containing protein 41
Swissprot	Q9M886	4e-60	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A498HFS4	1e-165	A0A498HFS4_MALDO; Uncharacterized protein
STRING	XP_008342076.1	1e-167	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-51	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	MDP0000881409